| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,335,164 – 11,335,222 |
| Length | 58 |
| Max. P | 0.638006 |
| Location | 11,335,164 – 11,335,222 |
|---|---|
| Length | 58 |
| Sequences | 8 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 66.27 |
| Shannon entropy | 0.60573 |
| G+C content | 0.51728 |
| Mean single sequence MFE | -20.54 |
| Consensus MFE | -3.07 |
| Energy contribution | -3.16 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.75 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.15 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11335164 58 - 24543557 ----------UUGCCGUCCGAU-GCCGAUGAGUGCUGAAAUCGGCAUUUGUCCGCUUUGCGGUGGGAAA ----------((.(((.(((..-((.((..(((((((....)))))))..)).))....)))))).)). ( -25.50, z-score = -3.47, R) >droPer1.super_20 1554939 50 + 1872136 ----------UUGCCCUUCGAU-GCC---GAAAGCCCAAAUCGACUUUUAUACCGACCGGGAAG----- ----------...(((((((..-..)---)))........(((..........)))..)))...----- ( -6.90, z-score = 0.17, R) >dp4.chrXR_group6 2948900 50 + 13314419 ----------UUGCCCUUCGAU-GCC---GAAACCCGAAAUCGACUUUUAUACCGACCGGGAAG----- ----------......((((..-..)---))).((((...(((..........))).))))...----- ( -9.00, z-score = -0.95, R) >droEre2.scaffold_4784 11339191 58 - 25762168 ----------UUGCCCUCCGAU-GCCGAUGAGUGCUGAAAUCGGCAUUUGUCCGCUUUGCGGUAGGAAA ----------....((((((..-((.((..(((((((....)))))))..)).))....))).)))... ( -25.30, z-score = -4.17, R) >droYak2.chr3L 11368754 58 - 24197627 ----------UUGCCCUCCGAU-GCCGAUGAGUGCUGAAAUCGGCAUUUGUCCGCUUUGCGGUAGGAAA ----------....((((((..-((.((..(((((((....)))))))..)).))....))).)))... ( -25.30, z-score = -4.17, R) >droSec1.super_0 3544768 58 - 21120651 ----------UUGCCCACCGAU-GACGAUGAGUGCUGAAAUCGGCAUUUGUCCGCUUUGCGGUGGGAAA ----------...(((((((..-(..((..(((((((....)))))))..))..)....)))))))... ( -28.40, z-score = -5.13, R) >droSim1.chr3L 10723043 58 - 22553184 ----------UUGCCCACCGAU-GCCGAUGAGUGCUGAAAUCGGCAUUUGUCCGCUUUGCGGUGGGAAA ----------...(((((((..-((.((..(((((((....)))))))..)).))....)))))))... ( -32.10, z-score = -6.06, R) >droVir3.scaffold_13049 1628597 69 + 25233164 UCACCCAACCAUGCCUACAGAUGGGCCACAGAUGAUAUCAUGGGUAAUUAUUUGAUAUGAACUAGAAAA ..((((......(((((....))))).....(((....)))))))........................ ( -11.80, z-score = 0.02, R) >consensus __________UUGCCCUCCGAU_GCCGAUGAGUGCUGAAAUCGGCAUUUGUCCGCUUUGCGGUGGGAAA ..............(((((..........(((((.((....)).)))))...........))))).... ( -3.07 = -3.16 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:22 2011