| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,313,361 – 11,313,453 |
| Length | 92 |
| Max. P | 0.897817 |
| Location | 11,313,361 – 11,313,453 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 85.12 |
| Shannon entropy | 0.25809 |
| G+C content | 0.39735 |
| Mean single sequence MFE | -21.09 |
| Consensus MFE | -16.53 |
| Energy contribution | -17.06 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11313361 92 - 24543557 UUAUGUACGCUGCUCCCAGCUCGCUGAAAGCAACACGAAAGUUAAUUAAACUUGAAAAUAAUAAAAGCAAAGCGGAGCAGAACAGAACAGAA--------------------- ...(((.(.(((((((..(((.(((.............(((((.....)))))............)))..))))))))))....).)))...--------------------- ( -21.01, z-score = -2.31, R) >droSec1.super_0 3526053 92 - 21120651 UUAUGUACUCUGCUCCCAGCUCGCUGAAAGCAACACGAAAGUUAAUUAAACUUGAAAAUAAUAAAAGCAAAGCGGAGCAGAACAGAACAGAA--------------------- ...(((..((((((((..(((.(((.............(((((.....)))))............)))..))))))))))))))........--------------------- ( -21.81, z-score = -2.82, R) >droSim1.chr3L 10703096 92 - 22553184 UUAUGUACGCUGCUCCCAGCUCGCUGAAAGCAACACGAAAGUUAAUUAAACUUGAAAAUAAUAAAAGCAAAGCGGAGCAGAACAGAACAGAA--------------------- ...(((.(.(((((((..(((.(((.............(((((.....)))))............)))..))))))))))....).)))...--------------------- ( -21.01, z-score = -2.31, R) >droYak2.chr3L 11349119 92 - 24197627 UUAUGUACGCUGCUCCCAGCUCGCUGAAAGCAACACGAAAGUUAAUUAAACUUGAAAAUAAUAAAAGCAAAGCGGAGCAGAACAGAACAGAA--------------------- ...(((.(.(((((((..(((.(((.............(((((.....)))))............)))..))))))))))....).)))...--------------------- ( -21.01, z-score = -2.31, R) >droEre2.scaffold_4784 11316960 97 - 25762168 UUAUGUACGCUGCUCCCAGCUCGCUGAAAGCAACACGAAAGUUAAUUAAACUUGAAAAUAAUAAAAGCAAAGCGGAGCGGAGCAGAACAGCACAGAA---------------- ...(((.(.(((((((..(((((((....((....(....)((((......))))...........))..))).)))))))))))....).)))...---------------- ( -24.70, z-score = -2.08, R) >dp4.chrXR_group6 2924920 113 + 13314419 UUAUGUACGCUGCUCCUCUCUCGUUGAAAACAACACAAAAGUUAAUUAAACUUGAAAAUAAUAAAAGCAAAGCAAAGCCAUGCCGUACCCGACCAGAACAGGACAGACCAGGA .........(((.((((.(((.((((...((.......(((((.....))))).............(((..((...))..))).))...)))).)))..)))))))....... ( -17.00, z-score = -0.07, R) >consensus UUAUGUACGCUGCUCCCAGCUCGCUGAAAGCAACACGAAAGUUAAUUAAACUUGAAAAUAAUAAAAGCAAAGCGGAGCAGAACAGAACAGAA_____________________ ...(((...(((((((..(((.(((.............(((((.....)))))............)))..)))))))))).)))............................. (-16.53 = -17.06 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:21 2011