Locus 6990

Sequence ID	dm3.chr3L
Location	11,308,284 – 11,308,351
Length	67
Max. P	0.747220

overview

Window 1

Location	11,308,284 – 11,308,351
Length	67
Sequences	5
Columns	67
Reading direction	reverse
Mean pairwise identity	58.11
Shannon entropy	0.74943
G+C content	0.46163
Mean single sequence MFE	-9.59
Consensus MFE	-3.36
Energy contribution	-4.60
Covariance contribution	1.24
Combinations/Pair	1.11
Mean z-score	-1.26
Structure conservation index	0.35
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.57
SVM RNA-class probability	0.747220
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11308284 67 - 24543557
CACCGCCCUCCACAUCCACCCACUGUUAUGUUUCAUUUUUCACUUAUCUGCAUGUGAGUGAAUGUGG
.........((((((.(((.((((((.(((..............)))..))).))).))).)))))) ( -14.54, z-score =  -2.14, R)
>droSim1.chr3L 10697171 52 - 22553184
---------------CCCCUUUCUGUUAUGUUUCAUUUUUCACUUAUCUGCAUGUGAGUGAAUGUGC
---------------..................(((..(((((((((......))))))))).))). (  -9.30, z-score =  -2.28, R)
>droYak2.chr3L 11343856 64 - 24197627
---CCGCCCCCUUCUCAAUCCACUGCUAUGUUUCAUUUUUCACUUAUCUGCAUGUGAGUGAAUGCUC
---...................................(((((((((......)))))))))..... (  -8.30, z-score =  -1.06, R)
>droEre2.scaffold_4784 11312148 53 - 25762168
--------------CGCCCCUUCUGCUAUGUUUCAUUUUUCACUUAUCUGCAUGUGAAUGAAUGCCC
--------------...................((((((((((..........))))).)))))... (  -5.80, z-score =  -0.76, R)
>droGri2.scaffold_15110 14034827 61 - 24565398
-CACUCCCCUCCCCUCCAGCCCCUUUGGUCUUAAGCCACAAACUCAGCUGGCAGUCGUUGAA-----
-............(((((((.....((((.....))))........))))).))........----- ( -10.02, z-score =  -0.08, R)
>consensus
___C__CC__C___UCCACCCACUGUUAUGUUUCAUUUUUCACUUAUCUGCAUGUGAGUGAAUGCGC
......................................(((((((((......)))))))))..... ( -3.36 =  -4.60 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:20 2011