| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,856,538 – 4,856,643 |
| Length | 105 |
| Max. P | 0.526307 |
| Location | 4,856,538 – 4,856,643 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 72.55 |
| Shannon entropy | 0.47150 |
| G+C content | 0.59990 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -10.82 |
| Energy contribution | -10.98 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4856538 105 + 23011544 GCAUCCCACUCCGUGGCGGCCCCACCACCAACAGCACCCACAUCCUGGCGAAUGUCCUGUCCGUGAAGCCACCACCCAUAUCGUCAGCAGGCUCCACUAAUGACA ............((((.(((..(((.....((((.(((((.....))).....)).))))..)))..))).)))).......((((..((......))..)))). ( -24.50, z-score = -0.37, R) >droSim1.chr2L 4727111 104 + 22036055 GCAUCCCAACCCCGACCCUCCGCUCCACCAGCAACAGCCAUAUCCUGGCGAAUGUCCUGUCCGUGGAGCCACC-CCGCUUUCGUCAGCAGGCUCCACUAAUGACG .............(((..((.(((.....)))....((((.....))))))..)))..(((.((((((((...-..(((......))).))))))))....))). ( -28.10, z-score = -2.56, R) >droSec1.super_5 2952114 102 + 5866729 GCAUCCCAACCCCGACC--CCGCUCCACCAGCAGCAGCCAUAUCCUGGCGAAUGUCCUGUCCGUGGAGCCACC-CCGUUUUCGUCAGCAGGCUCCACUAAUGACG .................--..(((((((..((((..((((.....)))).......))))..)))))))....-.......(((((..((......))..))))) ( -28.00, z-score = -2.23, R) >droYak2.chr2L 4866763 83 + 22324452 -------------------ACAGCCCCGCACACACAGUCAUAUCCUGGCGAAUGUCCUGUCCACAGAGCCACC--CACUUUCGUCAGAAGC-UCCACUAAUGACG -------------------.................(((((...((((((((.(..(((....)))..)....--....)))))))).((.-....)).))))). ( -16.10, z-score = -1.10, R) >droEre2.scaffold_4929 4938015 84 + 26641161 -------------------ACACCCCAACCCCAGCAGCCACAUCCUGGCGAAUGUCCUGUCCACAGAGCCACC--UCCUUUCGUCAGAAGCCUCCACUAAUGACG -------------------..............((.((((.....)))).......(((....))).))....--......(((((..((......))..))))) ( -14.40, z-score = -1.15, R) >consensus GCAUCCCA__CC____C__CCACCCCACCACCAGCAGCCAUAUCCUGGCGAAUGUCCUGUCCGUGGAGCCACC_CCCCUUUCGUCAGCAGGCUCCACUAAUGACG .............................................((((..(((.......)))...))))...........((((..((......))..)))). (-10.82 = -10.98 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:35 2011