| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,297,475 – 11,297,566 |
| Length | 91 |
| Max. P | 0.952750 |
| Location | 11,297,475 – 11,297,566 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 86.45 |
| Shannon entropy | 0.27801 |
| G+C content | 0.48265 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -23.51 |
| Energy contribution | -23.64 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.952750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11297475 91 - 24543557 CGUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCUUCUGCGGAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUC-GCAGACUACGCGCU--- (((((((.(((.((((.......)))).)))..)))((((((.(((((((((((...........))))))))))))-))))).))))....--- ( -32.40, z-score = -3.28, R) >droPer1.super_20 1510653 95 + 1872136 CAUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCGACUGCGGAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUUGGCAGCACCCCUGCACCC .....((.(((.((((.......)))).)))..))(.((((.((((((((((((...........)))))))))))).)))))............ ( -30.50, z-score = -2.23, R) >dp4.chrXR_group6 2904862 95 + 13314419 CAUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCGACUGCGGAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUUGGGAGCACCCCUGCACCC .....((.(((.((((.......)))).)))..))...((((((((((((((((...........))))))))))).(((....))))))))... ( -27.80, z-score = -1.23, R) >droAna3.scaffold_13337 5581819 86 - 23293914 CGUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCGCCAGCGUAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUUGCCAGCCCA--------- .(..((((......................((((((....))))))((((((((...........))))))))))))..)......--------- ( -25.10, z-score = -1.37, R) >droEre2.scaffold_4784 11301155 91 - 25762168 CGUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCUUCUGCGGAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUC-GCUGGCACCAACCC--- .............................((.((((...(((.(((((((((((...........))))))))))))-)).)))).))....--- ( -28.10, z-score = -2.07, R) >droYak2.chr3L 11332471 89 - 24197627 CGUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCUUCUGCGGAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUCGGUCGUCUUCCC------ (((((((.(((.((((.......)))).)))..)))..))))((((((((((((...........))))))))))))............------ ( -26.70, z-score = -2.10, R) >droSec1.super_0 3510455 91 - 21120651 CGUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCUUCUGCGGAUCGCAGGGCAUCCAUAAGUUUUGCUCUGCGGUC-GCUGGCAACUCCCC--- ........(((.((((.......)))).))).((((...(((.(((((((((((...........))))))))))))-)).)))).......--- ( -27.90, z-score = -1.65, R) >droSim1.chr3L 10685891 91 - 22553184 CGUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCUUCUGCGGAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUC-GCUGGCAACUCCCC--- ........(((.((((.......)))).))).((((...(((.(((((((((((...........))))))))))))-)).)))).......--- ( -27.90, z-score = -2.03, R) >consensus CGUAAGCCCAUUGAUUAAUUUGAAAUUUAUGAUGCUUCUGCGGAUCGCAGGGCAUCCAUAACUUUUGCUCUGCGGUC_GCAGCCAACCCCCC___ .....((.(((.((((.......)))).)))..))....((.((((((((((((...........)))))))))))).))............... (-23.51 = -23.64 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:16 2011