| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,296,012 – 11,296,102 |
| Length | 90 |
| Max. P | 0.793200 |
| Location | 11,296,012 – 11,296,102 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 98.45 |
| Shannon entropy | 0.02654 |
| G+C content | 0.42791 |
| Mean single sequence MFE | -19.33 |
| Consensus MFE | -19.49 |
| Energy contribution | -19.25 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.11 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11296012 90 - 24543557 GAAAUGGCACAGCGGAAUGUUGUA-UUUUUUUCGACAUGCCAAAACCAUCUGAUAACGAUGCGAACCCUCAAUUGACCGUUCUAUGAGAUG ....(((((...(((((.......-....)))))...)))))....(((((.(((.......((((..((....))..))))))).))))) ( -18.41, z-score = -0.89, R) >droSim1.chr3L 10684479 90 - 22553184 GAAAUGGCACAGCGGAAUGUUGUA-UUUUUUUCGACAUGCCAAAACCAUCUGAUAACGAUGCGAACCCUCAAUUGACCGUUCUAUGAGAUG ....(((((...(((((.......-....)))))...)))))....(((((.(((.......((((..((....))..))))))).))))) ( -18.41, z-score = -0.89, R) >droSec1.super_0 3509063 90 - 21120651 GAAAUGGCACAGCGGAAUGUUGUA-UUUUUUUCGACAUGCCAAAACCAUCUGAUAACGAUGCGAACCCUCAAUUGACCGUUCUAUGAGAUG ....(((((...(((((.......-....)))))...)))))....(((((.(((.......((((..((....))..))))))).))))) ( -18.41, z-score = -0.89, R) >droYak2.chr3L 11330875 91 - 24197627 GAAAUGGCACAGCGGAAUGUUGUAUUUUUUUCCGGCAUGCCAAAACCAUCUGAUAACGAUGCGAACCCUCAAUUGACCGUUCUAUGAGAUG ....(((((...(((((............)))))...)))))....(((((.(((.......((((..((....))..))))))).))))) ( -20.11, z-score = -0.86, R) >droEre2.scaffold_4784 11299671 90 - 25762168 GAAAUGGCACAGCGGAAUGUUGUA-UUUUUUCCGACAUGCCAAAACCAUCUGAUAACGAUGCGAACCCUCAAUUGACCGUUCUAUGAGAUG ....(((((...(((((.......-....)))))...)))))....(((((.(((.......((((..((....))..))))))).))))) ( -21.31, z-score = -2.02, R) >consensus GAAAUGGCACAGCGGAAUGUUGUA_UUUUUUUCGACAUGCCAAAACCAUCUGAUAACGAUGCGAACCCUCAAUUGACCGUUCUAUGAGAUG ....(((((...(((((............)))))...)))))....(((((.(((.......((((..((....))..))))))).))))) (-19.49 = -19.25 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:15 2011