| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,269,185 – 11,269,275 |
| Length | 90 |
| Max. P | 0.956554 |
| Location | 11,269,185 – 11,269,275 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 62.23 |
| Shannon entropy | 0.58849 |
| G+C content | 0.36164 |
| Mean single sequence MFE | -17.07 |
| Consensus MFE | -9.67 |
| Energy contribution | -10.54 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11269185 90 + 24543557 UCGCUAUAUCAAGACCCAUAUACAUAGACAUAGAU-------GUCUAUGGUGGGGCUCAGAACUAUUUUUUUUCAUUUUUUUUUGUUUCAGAUAGGG ..............(((((...((((((((....)-------))))))))))))........((((((.....((........))....)))))).. ( -19.10, z-score = -1.80, R) >droSim1.chr3L 10658053 85 + 22553184 UCGCUAUACCAUGUCCCAUAUACAUAGACUCGCGUCUAUCUCGUCUAUGGUGGGGCUCAGAACUAUUUUUUUU------------UUUCAGAUAGGG ........((..(((((((...(((((((.............))))))))))))))......((((((.....------------....)))))))) ( -20.22, z-score = -1.71, R) >droSec1.super_0 3483958 84 + 21120651 UCGCUAUACCAUGUCCCAUAUACAUAGACUCGCGUCUAUCUCGUCUAUGGUGGGGCUCAGAACAAUUUUUUUU------------UU-CAGAUAGGG ........((..(((((((...(((((((.............))))))))))))))...(((.((.....)).------------))-).....)). ( -19.72, z-score = -1.62, R) >droWil1.scaffold_180905 3127 84 - 20576 UUUUUACAACAA----CUUAUGUGUUGGUUUAAACA------GCUUAUG-UGUCGUUU--AACUAUUUGUUCUCUUUUUUCUUUUUUUUGAAUAUGA ......(((((.----(....))))))..((((((.------((.....-.)).))))--)).....(((((.................)))))... ( -9.23, z-score = -0.30, R) >consensus UCGCUAUACCAAGUCCCAUAUACAUAGACUCACAUC______GUCUAUGGUGGGGCUCAGAACUAUUUUUUUU____________UUUCAGAUAGGG ............(((((((...(((((((.............))))))))))))))......................................... ( -9.67 = -10.54 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:11 2011