| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,264,650 – 11,264,770 |
| Length | 120 |
| Max. P | 0.567780 |
| Location | 11,264,650 – 11,264,770 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.63 |
| Shannon entropy | 0.56757 |
| G+C content | 0.34195 |
| Mean single sequence MFE | -18.16 |
| Consensus MFE | -6.32 |
| Energy contribution | -7.46 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11264650 120 - 24543557 AUUUUUAAAACUUCUUAAGCCUUCUAACAAACAUAUGCCAAUUUCCCUAUAAAUAUUUACCUACUUAUUUAUGUCCAUUGGUACGUGUAUUUGUUUUUUAAGCGUUGCGCGCCAAUGCUU .........................((((((((..(((((((.....((((((((..........))))))))...)))))))..)))..)))))....((((((((.....)))))))) ( -21.70, z-score = -2.81, R) >droSim1.chr3L 10653200 118 - 22553184 AUUUUUAAAAAUUCUUAAGCCUUCUAACAAACAUGUGCCAAUUUUCCUAUAAAUAUUUACCUACUUAACUAUGCCCAUUGGUACGUGUAUUUGUUUUUUAAGCGAUU--CGCCAAUGCUU ................((((.....(((((((((((((((((..................................))))))))))))..)))))......(((...--)))....)))) ( -17.98, z-score = -1.77, R) >droSec1.super_0 3479188 118 - 21120651 AUUUUUAAAACUUCUUAAGCCUUCUAACAAGCAUGUGCCAAUUUUCCUAUAAAUAUUUACCUACUUAACUAUGCCCAUUGGUACGUGUAUUUGUUUUCCAAGCGAUU--CGCCAAUGCUU ................((((.....(((((((((((((((((..................................))))))))))))..)))))......(((...--)))....)))) ( -18.28, z-score = -1.55, R) >droEre2.scaffold_4784 11268940 105 - 25762168 AUUCCUUAAACUU-------UUUCUGACAAACAUGUGCCAGUUUUCCUAUAAAUAUUUACCUACUUAAAUAUGCCCACCGGUACGCGUAUUUGUUUCCUAAGCGAUU--CGCUU------ .............-------.....((((((.(((((...............(((((((......)))))))(((....))).))))).))))))....(((((...--)))))------ ( -14.70, z-score = -1.33, R) >droYak2.chr3L 11299291 106 - 24197627 AUUUUUUAAACUUCCUAAGCCUUCUGUGAAACAAGUGCCAAUUUUCCUAUAAAUAUUUACCUACUUAAAUAUGCUCACUGCUACGCGCAUUUGUU--------------CGCCAAUGCUU ................((((.....(((((.((((((((.............(((((((......)))))))((.....))...).)))))))))--------------)))....)))) ( -19.10, z-score = -3.16, R) >droAna3.scaffold_13337 5552189 100 - 23293914 --------------------CGCCGGGUAAACGUGUGCUAAAUUUCUUGUAAAUAUUUAUUCAAUUGAGUAAGCCCAUUUAUAUCCGUGUUUAUUUCGCCAACGAUUCGCACAAACGCUU --------------------.((((......))((((((((((....(((((((.(((((((....)))))))...))))))).....)))))..(((....)))...)))))...)).. ( -17.20, z-score = 0.00, R) >consensus AUUUUUAAAACUUCUUAAGCCUUCUAACAAACAUGUGCCAAUUUUCCUAUAAAUAUUUACCUACUUAAAUAUGCCCAUUGGUACGCGUAUUUGUUUUCUAAGCGAUU__CGCCAAUGCUU .........................(((((((((((((((((..................................))))))))))))..)))))......................... ( -6.32 = -7.46 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:08 2011