| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,256,089 – 11,256,181 |
| Length | 92 |
| Max. P | 0.668380 |
| Location | 11,256,089 – 11,256,181 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 66.24 |
| Shannon entropy | 0.64291 |
| G+C content | 0.43614 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -8.93 |
| Energy contribution | -9.49 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11256089 92 - 24543557 -----UAUUGCUCACAAAGGAAUCUGUUCCGAGAUAAACAUCUACCCAGGCACAAUCUUAAGAACCGGGG-AGCUGACAGAUCUGACGGGUUUCUAUG -----.........((.(((((((((((...((((...((.((.(((.((..(........)..)).)))-)).))....))))))))))))))).)) ( -21.60, z-score = -0.60, R) >droSim1.chr3L_random 514054 93 - 1049610 -----UAUUGCUCACAAAGGAACCUGUUCCGAGAUAAAAAUCUACCCAGGCACAAUCGUAAGAACCGGGGAAGCUGACAGAUCUGACGGGUUUCUAUG -----.........((.(((((((((((...((((......((.(((.((.....((....)).)).))).)).......))))))))))))))).)) ( -24.52, z-score = -1.50, R) >droSec1.super_0 3477514 93 - 21120651 -----UAUUGCUCACAAAGGAACCUGUUCCGCGAUAAAAAUCUACCCAGGCACAAUCGUAAGAACCGGGGAAGCUGACAGAUCUGACGGGUUUCUAUG -----.........((.((((((((((((.(((((....)))..(((.((.....((....)).)).)))..)).))((....)))))))))))).)) ( -22.80, z-score = -0.91, R) >droYak2.chr3L 11297535 84 - 24197627 -----AAUUACUCACAAAGGAACCUGUUCCGAGAUAACAAUCU--------ACAAUCAUAAGAGCCGGGA-UGCUGACAGAACUGACGGGUUUCUAUG -----.........((.(((((((((((...........((((--------....((....))....)))-)............))))))))))).)) ( -17.40, z-score = -0.90, R) >droEre2.scaffold_4784 11267204 91 - 25762168 ------AAUACUCACAAAGGAACCUGUUCCGAGAUAGCAAUCUACCCGGGCACAAUCAUAAGAACCGGGG-AGCUGACAGAUCUGACGGGUUUCUAUG ------........((.(((((((((((...((((..((..((.(((((...............))))).-)).))....))))))))))))))).)) ( -26.96, z-score = -2.24, R) >droAna3.scaffold_13337 5550405 81 - 23293914 AAAUCUGCUGCUUACAAAGGAACCUGUUAUAAGAUACAAAUCC-----------AUCCC--GGGUUG----UACAGGCAUAUCUGACAGGUUUCUAGG .................(((((((((((...(((((..(((((-----------.....--)))))(----(....)).))))))))))))))))... ( -20.60, z-score = -1.51, R) >droGri2.scaffold_15110 13989065 79 - 24565398 -----AAUUUCCCUUUUGGGAGUUUAAUGUUGGCUUAUAAC------------AACUGCAACAAAUGAU--AAAUACAUGAUUUCCCCAGUGUGUAUU -----....((((....))))(((....((((........)------------)))...))).......--..((((((..........))))))... ( -13.10, z-score = -0.10, R) >consensus _____UAUUGCUCACAAAGGAACCUGUUCCGAGAUAAAAAUCUACCC_GGCACAAUCGUAAGAACCGGGG_AGCUGACAGAUCUGACGGGUUUCUAUG .................(((((((((((...((((....................((....))..(((.....)))....)))))))))))))))... ( -8.93 = -9.49 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:07 2011