| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,244,871 – 11,244,942 |
| Length | 71 |
| Max. P | 0.934052 |
| Location | 11,244,871 – 11,244,942 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 94.94 |
| Shannon entropy | 0.08716 |
| G+C content | 0.41545 |
| Mean single sequence MFE | -18.54 |
| Consensus MFE | -16.48 |
| Energy contribution | -16.56 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.934052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11244871 71 - 24543557 --GCUACAAGAUACGAAUGUAUCUUCAGAAUUUCCUUUUCGCCUUUUCCACGGAAGC-GGGCGAAUGCAAAUUU --((...(((((((....)))))))............(((((((((((....)))).-))))))).))...... ( -19.80, z-score = -2.72, R) >droSim1.chr3L 10639064 71 - 22553184 --GCUACAAGAUACGAAUGUAUCUUCAGAAUUUCCUUUUCGCCUUUUCCACGGAAGC-GGGCGAAUGCAAAUUU --((...(((((((....)))))))............(((((((((((....)))).-))))))).))...... ( -19.80, z-score = -2.72, R) >droSec1.super_0 3466434 71 - 21120651 --GCUACAAGAUACGAAUGUAUCUUCAGAAUUUCCUUUUCGCCUUUUCCACGGAAGC-AUGCGAAUGCAAAUUU --((...(((((((....)))))))............(((((..((((....)))).-..))))).))...... ( -14.70, z-score = -1.76, R) >droYak2.chr3L 11285730 74 - 24197627 GAGCUACAAGAUACGAAUGUAUCUUCAGAAUUUCCUUUUCGCCUUUUCCACGGAAGCGGGGCGAAUGCAAAUUU ..((...(((((((....)))))))............((((((....((.(....).)))))))).))...... ( -19.70, z-score = -1.87, R) >droEre2.scaffold_4784 11255752 74 - 25762168 GAGAUACAAGAUACGAAUGUAUCUUCAGAAUUUCCUUUUCGCCUUUUCCACGGAAGCGGCGUGAAUGCAAAUUU ((((((((.........))))))))..(((((((.(((.((((.((((....)))).)))).))).).)))))) ( -18.70, z-score = -2.09, R) >consensus __GCUACAAGAUACGAAUGUAUCUUCAGAAUUUCCUUUUCGCCUUUUCCACGGAAGC_GGGCGAAUGCAAAUUU .......(((((((....)))))))..((((((.(..(((((((((((....))))..))))))).).)))))) (-16.48 = -16.56 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:06 2011