| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,221,406 – 11,221,509 |
| Length | 103 |
| Max. P | 0.828492 |
| Location | 11,221,406 – 11,221,509 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.91 |
| Shannon entropy | 0.37272 |
| G+C content | 0.33055 |
| Mean single sequence MFE | -18.02 |
| Consensus MFE | -9.56 |
| Energy contribution | -13.06 |
| Covariance contribution | 3.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11221406 103 + 24543557 UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCAUGGUGAUUAUGUUUUUGUAC-------------AGCACGAAAUAUAAUCAUUUUUGGGCGCAUUCCUUAC ..................................((((...(((((.((((((((((((((((...-------------..)).))))))))))))))..)))).)....)))).. ( -19.10, z-score = -2.01, R) >droSim1.chr3L 10615474 87 + 22553184 UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCAUUGUGAUUA----------------------------CGAAACAUAAUCAUUUU-GGGUGCAUUCCUUAC .....(((((.........................(((...)))((..(((((((----------------------------.......)))))))..)-))))))......... ( -13.20, z-score = -1.66, R) >droSec1.super_0 3443196 87 + 21120651 UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCACUGUGAUUA----------------------------CGAAACAUAAUCAUUUU-GGGUGCAUUCCUUAC .....(((((.........................(((...)))((..(((((((----------------------------.......)))))))..)-))))))......... ( -12.40, z-score = -1.43, R) >droYak2.chr3L 11260652 115 + 24197627 UAACCGCAUCAAUUCUAACUUCAUACUUAAUUUAAAGGUAUCCUCUUGGUGAUUAUGUUUCUGUAUUUUAUUCAACAAAAGUACGAGACACAAUCAUUUU-GGGUGUAUUCUUUAC ................................((((((((..(((..(((((((.((((((.(((((((........))))))))))))).)))))))..-)))..)).)))))). ( -25.70, z-score = -3.47, R) >droEre2.scaffold_4784 11231772 115 + 25762168 UAACCGCAUCAAUUCUAACUUCAUACAACAUUUAAAGGUCUCCUCCUGGUGAUUAUGUUUUCGUAUUUUAUUUAACAAAAGUACCAAACACAAUCAUUUU-GGGCGUAUUCCUUAC ..................................((((...((((..(((((((.(((((..(((((((........))))))).))))).)))))))..-))).)....)))).. ( -19.70, z-score = -2.36, R) >consensus UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCAUGGUGAUUAUGUUU__GUA______________AG_ACGAAACAUAAUCAUUUU_GGGUGCAUUCCUUAC ..................................((((...(((...((((((((((((...(((((((........)))))))..))))))))))))...)))......)))).. ( -9.56 = -13.06 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:18:02 2011