| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,204,043 – 11,204,111 |
| Length | 68 |
| Max. P | 0.978294 |
| Location | 11,204,043 – 11,204,111 |
|---|---|
| Length | 68 |
| Sequences | 7 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 59.05 |
| Shannon entropy | 0.72025 |
| G+C content | 0.56274 |
| Mean single sequence MFE | -21.54 |
| Consensus MFE | -9.17 |
| Energy contribution | -9.53 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11204043 68 - 24543557 GUUUUGGCAAUUGGUUCCAGAGCCAGUGGUCGCAUUGCCACCUCCGCUGGUGGCCAAAUCCUCUUGCU------------------ .....(((.(((((((....))))))).)))(((..((((((......))))))..........))).------------------ ( -22.90, z-score = -1.23, R) >droAna3.scaffold_13337 5499088 86 - 23293914 GGCUUGGCAGUUGCUACCAACCCUGCCCCCAGCACUACCAUUACCACCUCCAGCCACGCUUCCGGAACUGGAUUGCUCCUCUUUCU (((.((((.((((....))))..(((.....)))..................)))).)))...((((..(((....)))..)))). ( -17.10, z-score = -0.15, R) >droSim1.chr3L 10598483 68 - 22553184 GUUUUGGCAAUUGGUUCCAGAGCCAGUGGUCGCAUUGCCACCUCCGCUGGCGGCCAAAUCCUCUUGCU------------------ ..((((((..(((....))).((((((((..(........)..)))))))).))))))..........------------------ ( -24.20, z-score = -1.45, R) >droSec1.super_0 3426299 68 - 21120651 GUUUUGGCAAUUGGUUCCAGAGCCAGUGGUCGCAUUGCCACCUCCGCUGGCGGCCAAAUCCUCUUGCU------------------ ..((((((..(((....))).((((((((..(........)..)))))))).))))))..........------------------ ( -24.20, z-score = -1.45, R) >droYak2.chr3L 11242689 68 - 24197627 GUUUUGGCAAUUGGUUCCAGAGCCAGUGGUCGCGUUGCUACCUCCGCUGGUGGCCAAAUCAUCUUGCU------------------ (.((((((..(((....))).((((((((..(........)..)))))))).)))))).)........------------------ ( -22.30, z-score = -1.19, R) >droEre2.scaffold_4784 11214381 68 - 25762168 GUUGUUGCAAUUGGUUCCUGAGCCAGUUGCCGCAUUGCCACCUCCGCUGGUGGUCAAAUCCUCUUGCU------------------ ..(((.((((((((((....)))))))))).)))((((((((......))))).)))...........------------------ ( -27.00, z-score = -4.13, R) >droVir3.scaffold_13049 23270737 55 - 25233164 CAACUGGCAGUUGCCAGUCUCCGUCGACGUCAUCUCGUUCCGUUCCGUUGCAGUU------------------------------- ..((((((....))))))....(.(((((..((........))..))))))....------------------------------- ( -13.10, z-score = -1.64, R) >consensus GUUUUGGCAAUUGGUUCCAGAGCCAGUGGUCGCAUUGCCACCUCCGCUGGCGGCCAAAUCCUCUUGCU__________________ ....((((.(((((((....))))))).))))....(((.((......)).)))................................ ( -9.17 = -9.53 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:58 2011