| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,203,657 – 11,203,763 |
| Length | 106 |
| Max. P | 0.742917 |
| Location | 11,203,657 – 11,203,763 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Shannon entropy | 0.41207 |
| G+C content | 0.44403 |
| Mean single sequence MFE | -29.26 |
| Consensus MFE | -13.67 |
| Energy contribution | -14.03 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11203657 106 - 24543557 AAAAGUGCAAACAUCCAACGGACGUCUAU---------CGGCAGUGACUAACAAUACUGUCCGAUAAAGAAUGUGCCUAUCGGUGUGCUGUCGAUAUCACUAGUUCAUCGAUAGC ....(..((.((.(((...))).)).(((---------((((((((........))))).)))))).....))..)(((((((((.((((..(....)..)))).))))))))). ( -31.00, z-score = -2.49, R) >droSim1.chr3L 10598092 106 - 22553184 AAAAUUGCAAACAUCCAACGGGCGUCUAU---------CGACAGUGCCUUACAUUACUGUCCGAUGAUGAAUGUGCCUAUCGGUGUGCUGUCGAUAUCACCAGCUUAUCGAUAGC .................(((..((((.((---------((((((((........)))))).))))))))..)))..(((((((((.((((..(....)..)))).))))))))). ( -33.20, z-score = -2.68, R) >droSec1.super_0 3425911 106 - 21120651 AAAAUUGCAAACUUCCAACCGACGCCUAU---------CGACAGUGCCUAACAUUACUGUCCGAUUAUGAAUGUGCCUAUCGGUGUGCUGUCGAUAUCACCAGCUUAUCGAUAGC .................((((((((..((---------((((((((........)))))).)))).......)))....)))))..((((((((((.........)))))))))) ( -26.60, z-score = -2.32, R) >droYak2.chr3L 11242143 111 - 24197627 --AAGUUCAAACUUCCAACGGACGUCAAUCGGUAGACACGGCAGUGCCUAACAAAA-UGUUCGAUAA-GUUUGCGCCUAUCUGCGUGCUAUCGAUAUCACUAGUACAUCGAUAGC --.....(((((((....(((((((.......(((.(((....))).))).....)-))))))..))-)))))(((......))).(((((((((...........))))))))) ( -27.90, z-score = -1.20, R) >droEre2.scaffold_4784 11213797 107 - 25762168 -AAAAUUCAAGCUUACAACGGUCGUAUAUCG------AUAGACACGGCUAAGAAUUCUGUCCGGUGAUGAAUAAGCCUAUCGGCGUGUCAUCGAUAUCAAUA-UACAUCGAUACC -.................((((.((((((.(------(((.((.(((...((....))..)))))(((((....(((....)))...)))))..)))).)))-)))))))..... ( -27.60, z-score = -1.83, R) >consensus AAAAGUGCAAACUUCCAACGGACGUCUAU_________CGGCAGUGCCUAACAAUACUGUCCGAUAAUGAAUGUGCCUAUCGGUGUGCUGUCGAUAUCACUAGUUCAUCGAUAGC ..................((((((.................................)))))).............(((((((((.((((..(....)..)))).))))))))). (-13.67 = -14.03 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:58 2011