| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,820,593 – 4,820,685 |
| Length | 92 |
| Max. P | 0.572109 |
| Location | 4,820,593 – 4,820,685 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 70.42 |
| Shannon entropy | 0.59851 |
| G+C content | 0.52928 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -15.57 |
| Energy contribution | -14.98 |
| Covariance contribution | -0.59 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4820593 92 + 23011544 CGGCUUUGGUGACACGUGCUCCAAAAA-CUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCCGUGGCCAUUUUCCACUGUUUUUUAC-------------------- .((((.(((((.(((((((.((.....-.....)).)).)))))(((((.......)))))...))))).))))...................-------------------- ( -31.10, z-score = -1.09, R) >droPer1.super_1 5057121 112 + 10282868 CGGCUUCAGUGACACGUGCUCUAAAAU-GUGUCGGCACAACGUGGCGUAUACGUAUUGCGCGGACGCCGUGGCCAUUUUUCUUUUAUCCAACAACUGUUUUACCGUUUAUUCG (((...(((((((((((........))-)))))(((.((...((((((...(((.....))).)))))))))))...................)))).....)))........ ( -32.40, z-score = -1.28, R) >dp4.chr4_group3 3577476 112 + 11692001 CGGCUUCAGUGACACGUGCUCUAAAAU-GUGUCGGCACAACGUGGCGUAUACGUAUUGCGCGGACGCCGUGGCCAUUUUUCUUUUAUCCAACAACUGUUUUACCGUUUAUUCG (((...(((((((((((........))-)))))(((.((...((((((...(((.....))).)))))))))))...................)))).....)))........ ( -32.40, z-score = -1.28, R) >droEre2.scaffold_4929 4901614 92 + 26641161 CGGCUUUGGUGACACGUGCUCCAAAAA-CUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCCGUGGCCAUUUUGCAUUGUUUUUUUU-------------------- .((((.(((((.(((((((.((.....-.....)).)).)))))(((((.......)))))...))))).))))...................-------------------- ( -31.10, z-score = -0.79, R) >droYak2.chr2L 4830661 93 + 22324452 CGGCUUUGGUGACACGUGCUCCAAAAA-CUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCCGUGGCCAUUUUUCACUGUUUUUUUUU------------------- .((((.(((((.(((((((.((.....-.....)).)).)))))(((((.......)))))...))))).))))....................------------------- ( -31.10, z-score = -1.32, R) >droSec1.super_5 2916393 89 + 5866729 CGGCUUUGGUGACACGUGCUCCAAAAA-CUGGCGGCGCUACGUGGCGUAUACGUAUUGCG---ACGCCGUGGCCAUUUUCCACUGUUUUUUAC-------------------- .((((.(((((....((((((((....-.))).)))))..(((.(((....)))...)))---.))))).))))...................-------------------- ( -28.30, z-score = -0.61, R) >droSim1.chr2L 4690460 92 + 22036055 CGGCUUUGGUGACACGUGCUCCAAAAA-CUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCCGUGGCCAUUUUCCACUGUUUUUUAC-------------------- .((((.(((((.(((((((.((.....-.....)).)).)))))(((((.......)))))...))))).))))...................-------------------- ( -31.10, z-score = -1.09, R) >droMoj3.scaffold_6500 31222788 98 - 32352404 ACUCGCCGGCGACACGUGC-ACGUCGCGAUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCCGUGGCCAUUUUGGCAAA-UGUGUUGUGGAAAC------------- ......(.(((((((((..-..((((.((((((.(((...(((((((((.......)))))).))).))).)))))).))))..)-)))))))).)....------------- ( -40.80, z-score = -0.46, R) >droVir3.scaffold_12963 11688613 98 - 20206255 UCUUGCCGGCGACACGUGC-ACGGUCUGAUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCCGUGGCCAUUUUGCCAAA-UGUGUUGUGAAAAC------------- ........(((((((((..-..(((..((((((.(((...(((((((((.......)))))).))).))).))))))..)))..)-))))))))......------------- ( -39.50, z-score = -1.34, R) >droGri2.scaffold_15252 5481846 99 - 17193109 CGACGCCGGCGACACGUGC-CUGUCGUGAUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCGGACGCCGUAGCCAUUUUGCCAAAAUGUGUUGUGGUAAC------------- ....((((.((((((((..-.((.((.(((((((((((..(((.(((....)))...)))..).))))...)))))).)).))..))))))))))))...------------- ( -38.60, z-score = 0.11, R) >droWil1.scaffold_180772 1548074 86 + 8906247 ----UUUGCCGGCACGUGCUUCGAAACCGUAUCGGAAAUACAUGGCGUAUACUUAUUGCGCUGACGCUGUGGCCAUUUUCAUUUUCCUUU----------------------- ----......((((((.((.((....(((...)))........((((((.......)))))))).))))).)))................----------------------- ( -19.30, z-score = 0.09, R) >droAna3.scaffold_12916 9388624 86 + 16180835 ----UUGAGUAACACGUGCUCCAAAAA-GUGUCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCUGUGGCCAUUUUCCAUUUGUUUUC---------------------- ----..(((.((((.(((..(((...(-((((((((((((((((.....))))))..))))))))))).)))........))).)))))))---------------------- ( -29.90, z-score = -2.40, R) >consensus CGGCUUUGGUGACACGUGCUCCAAAAA_CUGGCGGCGCUACGUGGCGUAUACGUAUUGCGCUGACGCCGUGGCCAUUUUCCAUUGUUUUUUUC____________________ ........((.((..((((..((......))...)))).....(((((...((.....))...))))))).))........................................ (-15.57 = -14.98 + -0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:32 2011