| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,183,090 – 11,183,181 |
| Length | 91 |
| Max. P | 0.588038 |
| Location | 11,183,090 – 11,183,181 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 53.46 |
| Shannon entropy | 0.80376 |
| G+C content | 0.29467 |
| Mean single sequence MFE | -10.34 |
| Consensus MFE | -4.36 |
| Energy contribution | -4.60 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11183090 91 - 24543557 -AUUGAAUACCAGUUUCUUAUUUUUCUGCUGUUUUUAAUACGAAUUUCCUGCGGAAAUGUUUAUAAGUAUUUCCGAUUGUCCUUAAUUCUCU--------- -((((((...((((.............))))..))))))..(((((.....((((((((........)))))))).........)))))...--------- ( -13.66, z-score = -1.88, R) >droSim1.chr3L 10578923 70 - 22553184 ------------------AAUUAUAUACCAGUUUCUACU----UUUUCCUAUGGAAAUGUUUACAAGUAUUUCCGAAUGUCCUUUAUUGUCU--------- ------------------.....................----........((((((((........)))))))).................--------- ( -6.40, z-score = -0.07, R) >droSec1.super_0 3405843 92 - 21120651 AAUUGUAUACCACUUACUUCUUUUUCUGCAGUUUUUAAUACGAAUUUCCUACGGAAAUGUUUAUAAGUAUUUCCGAAUGUCCUUUAUUCUCU--------- ..((((((.......(((.(.......).))).....)))))).........(((((((........)))))))(((((.....)))))...--------- ( -11.60, z-score = -1.39, R) >droEre2.scaffold_4784 11192943 87 - 25762168 ----AAUUGAAACCCAGUUUCCAGUCUACAGUUUUCAGA-CGAAUUUCCACCGGAAAUGUGUAUAAAUACUUCCGAAUAUCCUUAAUUCUAU--------- ----....(((((...)))))..((((.........)))-)(((((.....(((((.(((......))).))))).........)))))...--------- ( -11.64, z-score = -0.70, R) >droWil1.scaffold_180955 723245 95 + 2875958 -----AUUGAUGAUAAGUUGGAAAAUUUCCUUUUUUAUAAGAAACCAGCUGAAGGUAAAC-UACAUAUAUCUAUACAUAUUUCAUAUUCUUUGAAUCCUUU -----....((((..((((((....((((.((......))))))))))))..(((((...-......))))).........))))................ ( -8.40, z-score = 1.43, R) >consensus _____AAUAACACUUACUUAUUAUUCUGCAGUUUUUAAUACGAAUUUCCUACGGAAAUGUUUAUAAGUAUUUCCGAAUGUCCUUUAUUCUCU_________ ...................................................((((((((........)))))))).......................... ( -4.36 = -4.60 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:55 2011