| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,176,333 – 11,176,425 |
| Length | 92 |
| Max. P | 0.553184 |
| Location | 11,176,333 – 11,176,425 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 63.56 |
| Shannon entropy | 0.59576 |
| G+C content | 0.32081 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -7.50 |
| Energy contribution | -8.74 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11176333 92 + 24543557 ----------UUAGAUUAGUUUAAUCAAACUUUCGCAACCAGAGAAUGAUAUCUGCUAACGAUAUCGUUCAAAGGCCAAAA----------UCAUGUUAGGUGAAACUGGUA ----------...((..(((((....))))).))...(((((.((((((((((.......))))))))))....(((....----------........)))....))))). ( -22.60, z-score = -2.72, R) >droEre2.scaffold_4784 11185866 90 + 25762168 ----------UUAGAUUACUUUACUCGACUUUUCGUAACCAGAGAAUGAUAUCUG--ACCGAUAUCGCUCCAAGGCCGAUG----------UGAUAUUAUGUGAAACUGAUA ----------(((.((....(((((((..(((((.......))))).((((((..--...))))))(((....)))))).)----------)))....)).)))........ ( -14.50, z-score = -0.13, R) >droYak2.chr3L 11213737 90 + 24197627 ----------UCAGAUUAGUUUAAUCAACCUUUCGUAACUAGAGAAUGAUAUCUG--AUCGAUAUCGUUUAAAGGGCAUAA----------UGAUAUUAUGUGAAACUGAUA ----------....((((((((......(((((..........((((((((((..--...)))))))))))))))((((((----------(...))))))).)))))))). ( -21.70, z-score = -2.39, R) >droSim1.chr3L 10572279 102 + 22553184 ----------UUAGAUUAGUUUAAUCAACCUUUCGCAACCAGAGAAUGAUAUCUGACAUCGAUAUCGUUCAAAGGCAAAAAAUCAUAUAAAUCAUAUCAUAUGAAACUGUUA ----------...(((((...))))).............(((.((((((((((.......))))))))))............((((((..........))))))..)))... ( -17.70, z-score = -1.80, R) >apiMel3.GroupUn 304677820 102 - 399230636 CACGCAGUGCUAUGAUUAUAUUGCUUUAAUAUU-GCAAUUGUGUGAUAGUAUGAAUGGUUGAU-UCAAUCAAUAGAAAGUAAU-------AUUA-AUAACAAGACGAUUGUA ((((((((((....((((........))))...-)).)))))))).((((((.....((((((-...))))))........))-------))))-...((((.....)))). ( -18.02, z-score = 0.28, R) >consensus __________UUAGAUUAGUUUAAUCAACCUUUCGCAACCAGAGAAUGAUAUCUG__AUCGAUAUCGUUCAAAGGCCAAAA__________UCAUAUUAUGUGAAACUGAUA ..............((((((((..........((.......))((((((((((.......)))))))))).................................)))))))). ( -7.50 = -8.74 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:53 2011