| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,175,974 – 11,176,087 |
| Length | 113 |
| Max. P | 0.638292 |
| Location | 11,175,974 – 11,176,087 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.11 |
| Shannon entropy | 0.35247 |
| G+C content | 0.27805 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -13.53 |
| Energy contribution | -13.91 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11175974 113 - 24543557 UAAAAGAAGAACAUGUGUAGCUACAGAUUGUGUAUUUAUACUUAUAAUUUACUCGUUUGAAGUGCAAUAAAAAAUGGAUAGCAACAUAAACAGGUAGAAGCACGAAAUAAAAA .............(((((..((((((((((((..........)))))))).((.(((((...(((...............)))...)))))))))))..)))))......... ( -18.16, z-score = -0.90, R) >droYak2.chr3L 11213372 102 - 24197627 --UAGAAUGAACAUGUGUAGCUACAGAUUAUGUACUGGUUCUU-UAACUUAUAUAUUAUUUGUUUAUUGAA------GCAAUAAAAU--AUGGAUAGAAGCACGAAAUAAAAA --...........(((((..((((((((.(((((..((((...-.))))..))))).)))))(((((((..------.)))))))..--.....)))..)))))......... ( -16.30, z-score = -0.66, R) >droSec1.super_0 3398848 113 - 21120651 UAAAAGAAGAACAUGUGUAGCUACAGAUUGUGUAUUUAUACUUAUAUAUUACUUGUUUGAAGUGCAAUAAAAAAUGGAUAGCAAAGCAAACAGGUAGAAGCACGAAAUAAAAA .............(((((..........((((((........))))))(((((((((((...(((...............)))...)))))))))))..)))))......... ( -21.76, z-score = -1.98, R) >droSim1.chr3L 10571958 110 - 22553184 ---UAAAAGAACAUGUGUAGCUACAGAUUGUGUAUUUAUACUUAUAUAUCACUUGUUUGAAGUGCAAUAAAAAAUGGAUAGCAAAGCAAACAGGUAGAAGCACGAAAUAAAAA ---..........(((((..((((.(((.(((((........))))))))..(((((((...(((...............)))...)))))))))))..)))))......... ( -22.76, z-score = -2.23, R) >consensus __AAAAAAGAACAUGUGUAGCUACAGAUUGUGUAUUUAUACUUAUAAAUUACUUGUUUGAAGUGCAAUAAAAAAUGGAUAGCAAAACAAACAGGUAGAAGCACGAAAUAAAAA .............(((((...((((.....))))..............(((((((((((...(((...............)))...)))))))))))..)))))......... (-13.53 = -13.91 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:52 2011