| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,166,652 – 11,166,745 |
| Length | 93 |
| Max. P | 0.571076 |
| Location | 11,166,652 – 11,166,745 |
|---|---|
| Length | 93 |
| Sequences | 13 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.74 |
| Shannon entropy | 0.68452 |
| G+C content | 0.48620 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -10.22 |
| Energy contribution | -9.57 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.80 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11166652 93 + 24543557 --------CAGUUAAUUAGAGAAAACGAAAAUGAACAAAGAGUUUAUCACGCAGGGCGGCACGCCUAUAACCGCUGAAUUGGCCACGGUAAUUAGC--AGUUA-------------- --------..(((((((........((...((((((.....))))))..))..(((((...)))))...((((.((.......)))))))))))))--.....-------------- ( -17.80, z-score = 0.00, R) >droGri2.scaffold_15110 10151939 92 - 24565398 AAGGACAGUACCCAUUUAGCA---------AUGAACAAGGAGUUUACCAUGCAGGGCGGCACGCCCAUAACCCCUGAACUGGCAACGGUAAAUGGC--AUCCC-------------- ..(((......((((((.(((---------.(((((.....)))))...))).(((((...)))))...........((((....)))))))))).--.))).-------------- ( -24.10, z-score = -0.10, R) >droMoj3.scaffold_6680 17833378 94 + 24764193 AAGCGCCCGGACCAAUUAGCAC-------CAUGAACAAGGAGUUUAUCAUGCAAGGCGGCACGCCCAUCACCAGCGAAUUGGCAACGGUAAAGGAC--AGUCC-------------- ......(((..((((((.(((.-------.((((((.....))))))..)))..((((...))))...........))))))...)))........--.....-------------- ( -21.40, z-score = 0.50, R) >droVir3.scaffold_13049 23227075 93 + 25233164 AAGUUCCUUCGUCAAUUAGCAC-------AAUGAACAAGGAGUUUAUCAUGCAGGGCGGCACGCCUAUAACCUGCGAGCUGGCAACGGUAAACAAC--GACU--------------- ....(((((.((..(((.....-------)))..)))))))(((((((.((((((..((....)).....))))))....(....))))))))...--....--------------- ( -24.00, z-score = -0.86, R) >droWil1.scaffold_180955 700203 77 - 2875958 ----------------CAGGAGC------AAUGAAUAAAGAGUUUAUCACGCAGGGUGGCACACCCAUAACCGCUGAAUUGGCCACGGUAAUUGGC--UGU---------------- ----------------..((.((------.((((((.....))))))...)).(((((...)))))....))........(((((.......))))--)..---------------- ( -17.40, z-score = 0.56, R) >droPer1.super_20 1379584 84 - 1872136 --------CAUCCAAUUAGAA---------AUGAACAAGGAGUUCAUCACCCAGGGUGGUUUGCCCAUAACAUCCGAAUUGGCAACGGUAGGCAAC--GCCUC-------------- --------...((((((.((.---------((((((.....))))))......((((.....))))......))..))))))....(((.(....)--)))..-------------- ( -19.60, z-score = -0.26, R) >dp4.chrXR_group6 2775269 84 - 13314419 --------CAUCCAAUUAGAA---------AUGAACAAGGAGUUCAUCACCCAGGGUGGUUUGCCCAUAACAUCCGAAUUGGCAACGGUAGGCAAC--GCCUU-------------- --------...((((((.((.---------((((((.....))))))......((((.....))))......))..))))))....(((.(....)--)))..-------------- ( -19.60, z-score = -0.22, R) >droAna3.scaffold_13337 5457446 85 + 23293914 --------UACCCAAUUAGAG-------AAAUGAACAAAGACUUCAUCACGCAGGGCGGUACGCCCAUAACCGCCGAAUUGGCCACGGUAAUUAG---ACUCU-------------- --------.........((((-------..(((((.......)))))......(((((...)))))...((((((.....)))...)))......---.))))-------------- ( -17.20, z-score = -0.44, R) >droEre2.scaffold_4784 11175874 93 + 25762168 --------CAGCUAAUUAGAGAAAACGAAAAUGAACAAAGAGUUCAUCACGCAGGGCGGCACGCCCAUUACCGCCGAAUUGGCCACGGUAAUUAGC--AGUCC-------------- --------..((((((((..(....((...((((((.....))))))..))..(((((...)))))......(((.....)))..)..))))))))--.....-------------- ( -26.00, z-score = -2.44, R) >droYak2.chr3L 11203661 99 + 24197627 --AAUCACCAGCUAAUUAGAGCGAACGAAAAUGAACAAAGAGUUCAUCACGCAGGGCGGCACGCCCAUUACCGCCGAAUUGGCCACGGUAAUUAGC--AGUCU-------------- --........(((((.....(((...((...(((((.....))))))).))).(((((...))))).((((((((.....)))...))))))))))--.....-------------- ( -27.40, z-score = -1.97, R) >droSec1.super_0 3389850 93 + 21120651 --------CAGCUAAUUAGAGAAAACGAAAAUGAACAAAGAGUUCAUCACGCAGGGCGGCACGCCUAUAACCGCCGAAUUGGCCACGGUAAUUAGC--AGUCA-------------- --------..((((((((..(....((...((((((.....))))))..))..(((((...)))))......(((.....)))..)..))))))))--.....-------------- ( -23.40, z-score = -1.63, R) >droSim1.chr3L 10563034 93 + 22553184 --------CAGCUAAUUAGAGAAAACGAAAAUGAACAAAGAGUUCAUCACGCAGGGCGGCACGCCUAUAACCGCCGAAUUGGCCACGGUAAUUAAC--AGUCA-------------- --------..(((((((........((...((((((.....))))))..))...(((((...........))))).))))))).............--.....-------------- ( -19.90, z-score = -0.82, R) >apiMel3.Group9 9293245 109 - 10282195 ----UAUAUACCCGAGGAACACGAG-AACGCUGAUCAAAACAGCUGUCGUC---GGGGGCAAACCGAUCGACGAGAAGACGUGCAUGGUAAAUUCCUUGAUCUCUGAAAAGCCUUUU ----........(((((((((((..-...((((.......))))(((((((---((.......)))).)))))......)))).........))))))).................. ( -27.30, z-score = -0.51, R) >consensus ________CAGCCAAUUAGAA________AAUGAACAAAGAGUUCAUCACGCAGGGCGGCACGCCCAUAACCGCCGAAUUGGCCACGGUAAUUAGC__AGUCC______________ ..............................((((((.....))))))......(((((...)))))...........((((....))))............................ (-10.22 = -9.57 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:51 2011