| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,162,727 – 11,162,779 |
| Length | 52 |
| Max. P | 0.756104 |
| Location | 11,162,727 – 11,162,779 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 66.71 |
| Shannon entropy | 0.57084 |
| G+C content | 0.37503 |
| Mean single sequence MFE | -8.90 |
| Consensus MFE | -4.47 |
| Energy contribution | -4.13 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11162727 52 - 24543557 UUGGUAUUUUGUUUAAGUACCGAAAUCGUGUCUUUUUCAAUCAUCCGCGCAA----------- (((((((((.....)))))))))....((((...............))))..----------- ( -9.46, z-score = -1.79, R) >anoGam1.chr3R 2570747 62 - 53272125 UUCACAUCUUGUCUCAAUAUUGAAA-GAUGACAAACCACACCGCUUGCUAAACACCUAUGCUA ....((((((.((........))))-))))................................. ( -6.10, z-score = -0.97, R) >droSim1.chr3L 10558419 52 - 22553184 UUGGUAUUUUGCUUAAGUACCAAAAUCGUAUCUUUUUGAAUCAUCCGCGCAA----------- (((((((((.....))))))))).............................----------- ( -8.20, z-score = -1.25, R) >droSec1.super_0 3385991 52 - 21120651 UUGGUAUUUUGUUUAAGUACCAAAAUCGUAUCUUUUUGAAUCAUCCGCGCAA----------- (((((((((.....))))))))).............................----------- ( -8.20, z-score = -1.51, R) >droYak2.chr3L 11199507 52 - 24197627 UUGGUAUUUUUUGUAUGUACCGAAAUCGUGUGUUCUUGAAACAUCCGCGCAA----------- (((((((.........)))))))....(((((.............)))))..----------- ( -9.62, z-score = -0.70, R) >droEre2.scaffold_4784 11171951 50 - 25762168 UUGGUAUUUU--CGAUGUACCAAAAUCGUGGGACUUCGAAUCAUCCGCGCAA----------- ..((....((--(((.((.(((......))).)).)))))....))......----------- ( -11.80, z-score = -0.98, R) >consensus UUGGUAUUUUGUUUAAGUACCAAAAUCGUGUCUUUUUGAAUCAUCCGCGCAA___________ (((((((.........)))))))........................................ ( -4.47 = -4.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:50 2011