| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,144,347 – 11,144,439 |
| Length | 92 |
| Max. P | 0.769996 |
| Location | 11,144,347 – 11,144,439 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.15 |
| Shannon entropy | 0.48674 |
| G+C content | 0.46911 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -13.76 |
| Energy contribution | -13.48 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.769996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11144347 92 + 24543557 AGUGAAAAUCGAGUGCAGUCCGC------UACUUUGUCUGGAAUUGAAUCUGAAUCUGAAUCCC--AACCCAUCGGCGGCUGCAGUUGAAAGUGAAUUUU ........((((.(((((.((((------(.....((..(((.((..((....))..)).))).--.)).....)))))))))).))))........... ( -24.20, z-score = -1.41, R) >droSim1.chr3L 10540226 90 + 22553184 AGUGAAAAUCGAGUGCAGUCCGC------UACUUUGUCUGGAAUCGAACUC--AUCUGAAUCUC--AACCCAUCGGCGGCUGCAGUUGAAAGUGAAUUUG ........((((.(((((.((((------(.....((..(((.(((.....--...))).))).--.)).....)))))))))).))))........... ( -25.10, z-score = -1.45, R) >droSec1.super_0 3367937 86 + 21120651 AGUGAAAAUCGAGUGCAGUCCGC------UACUUUGUCUGGAAUCGA------AUCUGAAUCUC--AACCCAUCGGCGGCUGCAGUUGAAAGUGAAUUUG ........((((.(((((.((((------(.....((..(((.(((.------...))).))).--.)).....)))))))))).))))........... ( -25.10, z-score = -1.88, R) >droYak2.chr3L 11180791 87 + 24197627 AGUGAAAAUCGAGUGCAGUCCGC------AACAUUGUCUGAGUUCGA------AUCCGAAUCUCUCAACCCAUCGGCGGUUGCAGUUGAAAGUGAAUUU- ........((((.(((((.((((------......((..(((((((.------...)))).)))...))......))))))))).))))..........- ( -24.90, z-score = -1.89, R) >droEre2.scaffold_4784 11153814 85 + 25762168 AGUGAAAAUCGAGUGCAGUCCGC------AACAUUGCCUGAAACCGA------AUCUGAAUCUC--AACCCAUCGGCGGCUGCAGUUGAAAGUGAAUUU- ........((((.(((((((.((------(....)))......((((------...((.....)--).....)))).))))))).))))..........- ( -20.50, z-score = -0.69, R) >droPer1.super_20 1353075 98 - 1872136 AGUGAAAAUCGAGUGCAGCCCGUGUCCGAAACUGAGUCUGAAUCCGAAUCGGAAUCCGUGGCUC-CUACCAUUCGGGCGCUGCAGUUGAAAGUGAAUUC- ........((((.((((((....(((((((...(((((.((.((((...)))).))...)))))-......))))))))))))).))))..........- ( -33.60, z-score = -2.79, R) >droWil1.scaffold_180955 673471 90 - 2875958 AGUGAAAAUCGAGUGCAAUCGUUGUCGGCAUAUAUUUUUUGGCCUGG-------UCUUUGCCUUUGGGC---GCUGACGCUGCAGUUGAAAGUGAAUUGA ........((((.((((...((.((((((...((.....))((((((-------(....)))...))))---)))))))))))).))))........... ( -23.10, z-score = 0.07, R) >consensus AGUGAAAAUCGAGUGCAGUCCGC______AACUUUGUCUGGAAUCGA______AUCUGAAUCUC__AACCCAUCGGCGGCUGCAGUUGAAAGUGAAUUU_ ........((((.(((((.((((....................................................))))))))).))))........... (-13.76 = -13.48 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:49 2011