| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,116,573 – 11,116,625 |
| Length | 52 |
| Max. P | 0.879621 |
| Location | 11,116,573 – 11,116,625 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 82.63 |
| Shannon entropy | 0.29600 |
| G+C content | 0.58215 |
| Mean single sequence MFE | -18.48 |
| Consensus MFE | -12.72 |
| Energy contribution | -13.20 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11116573 52 - 24543557 GACAGCCAAUUUUGAGUAGCGGAAACAGUUGGAGCUGCUGCCCCGAAAUGGG .....(((.(((((.(((((((...(....)...)))))))..)))))))). ( -15.90, z-score = -1.58, R) >droSim1.chr3L 10510945 52 - 22553184 GACAGCCGAUUUGGAGCAGCGGUAACAGUUGGAGCUGCUGCCCCGAAAUGGG .....(((.(((((.((((((((..(....)..)))))))).))))).))). ( -24.20, z-score = -3.86, R) >droSec1.super_0 3339002 52 - 21120651 GACAGCCGAUUUGGAGCAGCGAGAACAGUUGGAGCUGCUGCCCCGAAAUGGG .....(((.(((((.(((((.((..(....)...))))))).))))).))). ( -18.60, z-score = -2.29, R) >droYak2.chr3L 11145092 50 - 24197627 -ACAACCGAUGCGGAGGACUGGGAACAGUGGGAGCUGCU-CCCUGCAAUGGG -....(((.((((....((((....))))(((((...))-))))))).))). ( -19.40, z-score = -2.08, R) >droEre2.scaffold_4784 11123162 50 - 25762168 -ACAACCGAUUCGGAGGACUGAAAGCAGUUGGAGCUGCU-CCCUGCAAUGGG -....((.((((((.(((......(((((....))))))-))))).))).)) ( -14.30, z-score = -0.65, R) >consensus GACAGCCGAUUUGGAGCAGCGGAAACAGUUGGAGCUGCUGCCCCGAAAUGGG .....(((.(((((.(((((((...(....)...))))))).))))).))). (-12.72 = -13.20 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:46 2011