| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,112,132 – 11,112,237 |
| Length | 105 |
| Max. P | 0.560723 |
| Location | 11,112,132 – 11,112,237 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.41 |
| Shannon entropy | 0.36614 |
| G+C content | 0.34355 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -12.10 |
| Energy contribution | -13.64 |
| Covariance contribution | 1.54 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11112132 105 - 24543557 ACCAUUCUAGAAACAUUUAUGUUACAUGU--------ACAUACAUACACAUGCAAUGCUUCAUUUUCGGGCGCUUUUCCUUCGAGUGUCACAUGGACACAACUUUUUAAUGCA .((((....(((.(((((((((...((((--------....))))..))))).)))).))).......(((((((.......)))))))..)))).................. ( -19.30, z-score = -1.46, R) >droSim1.chr3L 10506471 113 - 22553184 ACCAUUAUAGAAACAUUUAUGUUACAUGUAUGUACAUAUGUACAUACAUAUGCAAUGUUUCAUUUUUGGGCGCUUUUCCUUCGAGUGUCACAUGGACACAACUUUUUAAUGCA .((((....(((((((...(((...((((((((((....))))))))))..)))))))))).......(((((((.......)))))))..)))).................. ( -31.30, z-score = -3.81, R) >droSec1.super_0 3334637 113 - 21120651 ACCAUUAUAGAAACAUUUAUGUUACAUGUAUGUACAUAUGUACAUACAUAUGCAAUGUUUCAUUUUUGGGCGCUUUUCCUUCGAGUGUCACAUGGACACAACUUUUUAAUGCA .((((....(((((((...(((...((((((((((....))))))))))..)))))))))).......(((((((.......)))))))..)))).................. ( -31.30, z-score = -3.81, R) >droYak2.chr3L 11140646 108 - 24197627 ACCAUUAUAGAAACAUUUGUGUUAGAAAACUGC---UCAGUAAGU-UAUAUGCAAUGUUU-GUUUUGGAGCGCUUUUCCUUUGAGUGUCACAUGGCCACAGCUUUUUAAUGCA .................(((((((((((.(((.---...(((...-....))).......-((..((..((((((.......))))))..))..))..))).))))))))))) ( -20.20, z-score = 0.85, R) >droEre2.scaffold_4784 11118675 112 - 25762168 ACCAUUACAAAAACAUUUAUGUUAGAAAACUGCUCAGUAUUUAACUUACUUG-AGCACAUUGUUUUUGAGCGCUUUUCCUGUAUGUGUCACAUGGACACAACUUUUUAAUGCA .......((((((((.....(((....)))(((((((((.......))).))-))))...)))))))).(((.((.....((.((((((.....)))))))).....))))). ( -25.20, z-score = -2.25, R) >consensus ACCAUUAUAGAAACAUUUAUGUUACAUGUAUGC_CAUAAGUACAUACAUAUGCAAUGUUUCAUUUUUGGGCGCUUUUCCUUCGAGUGUCACAUGGACACAACUUUUUAAUGCA .((((....(((((((((((((...((((((....))))))......))))).)))))))).......(((((((.......)))))))..)))).................. (-12.10 = -13.64 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:45 2011