| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,111,704 – 11,111,811 |
| Length | 107 |
| Max. P | 0.731196 |
| Location | 11,111,704 – 11,111,811 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 79.15 |
| Shannon entropy | 0.38327 |
| G+C content | 0.42393 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -21.47 |
| Energy contribution | -21.59 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11111704 107 - 24543557 CAUAUGCAUGUACAUACAUAAAUACAGCGGUGCAAAGGUGUGAUUGUGUAUGUGCGGCUGCGGUAGCAAAACA-GAGUAAAGCAAAAACCGAAACAGCAACGGUGUGA---- (((((...(((((((((((((.((((.(........).)))).)))))))))))))((((((((.((......-.......))....))))...))))....))))).---- ( -32.12, z-score = -1.65, R) >droSim1.chr3L 10506043 107 - 22553184 CAUAUACAUGUACAUACAUAAAUACAGCGGUGCGAAGGUGUGAUUGUGUAUGUGCGGCUGCGGUAGCAAAACA-GAGUAAAGCAAAAACCGAAACAGCAACGGUGUGA---- ..(((((.(((((((((((((.((((.(........).)))).)))))))))))))((((((((.((......-.......))....))))...))))....))))).---- ( -32.42, z-score = -2.14, R) >droSec1.super_0 3334209 107 - 21120651 CAUAUACAUGUACAUACAUAAAUACAGCGGUGCGAAGGUGUGAUUGUGUAUGUGCGGCUGCGGUAGCAAAACA-GAGUAAAGCAAAAACCGAAACAGCAACGGUGUGA---- ..(((((.(((((((((((((.((((.(........).)))).)))))))))))))((((((((.((......-.......))....))))...))))....))))).---- ( -32.42, z-score = -2.14, R) >droYak2.chr3L 11140227 103 - 24197627 ----CACAUACAUAUACGUAUAUACAGCGGUGUGAAGGUGUGAUUGUGUAUGUGCGGCUGCGGUAGCAAAACA-GAGUAAAGCAAAAACCGAAACAGCAACGGUGUGA---- ----..(((((.....((((((((((.((((...........))))))))))))))((((((((.((......-.......))....))))...))))....))))).---- ( -26.12, z-score = -0.10, R) >droEre2.scaffold_4784 11118249 103 - 25762168 ----CAUAUACAUAUACGUAUAUACAGCGGUGGGAAGGUGUGAUUGUGUAUAUGCGGCUGCGGUAGCAAAACA-GAGUAAAGCAAAAACCGAAACAGCAACGGUUUGG---- ----....(((.....((((((((((.((((.(.......).))))))))))))))..(((....))).....-..)))......((((((.........))))))..---- ( -22.10, z-score = 0.08, R) >droMoj3.scaffold_6680 17770343 111 - 24764193 AAUAUGUGUGUAAAUAUGUAUAAGGAGU-GUCUGUUUGUAUGCAUGCAUGUGAACGGCUAUGGUAGCAAAACAUAACCAAAGCAAAAGGGGGAAAAAAAACUGAAAAAAGUA .((((((((....)))))))).......-.((((((..((((....))))..))).(((.((((...........)))).))).......)))......(((......))). ( -20.70, z-score = -0.79, R) >consensus CAUAUACAUGUACAUACAUAAAUACAGCGGUGCGAAGGUGUGAUUGUGUAUGUGCGGCUGCGGUAGCAAAACA_GAGUAAAGCAAAAACCGAAACAGCAACGGUGUGA____ ....(((((((((((((((((.((((.(........).)))).)))))))))))).((((((((.((..............))....))))...))))....)))))..... (-21.47 = -21.59 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:44 2011