Locus 6955

Sequence ID dm3.chr3L
Location 11,096,219 – 11,096,339
Length 120
Max. P 0.791939
window9576

overview

Window 6

Location 11,096,219 – 11,096,339
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.54
Shannon entropy 0.06122
G+C content 0.44692
Mean single sequence MFE -33.40
Consensus MFE -29.02
Energy contribution -29.13
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.70
SVM RNA-class probability 0.791939
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11096219 120 + 24543557
GGAAGAGGUCUGCCGGCUUACAUCCAAAGGUCAAGACUUUAUCCGGUGGGCCAGUUUUAAGCCCCAUUUGCGAAACUAUAAAAAUGAUACACGUGCAUAAGCUGCACGAGAAAUUUUCUC
((((((..(((...(((((((.....(((((....))))).....)))))))((((((..((.......))))))))..............((((((.....)))))))))..)))))). ( -31.90, z-score =  -1.23, R)
>droSim1.chr3L 10491854 119 + 22553184
GGAAGAGGUCUGC-GGCUUACAUCCAAAGGUCAAGACUUCAUCCGGUGGGUCAGUUUUAAGCCCCAUUUGCGAAACUAUAAAAAUUACACACGUGCAUAAGCUGCACGAGAAAUUUUCUC
(((.(((((((..-(((((........))))).))))))).)))((((((.(........).)))))).......................((((((.....))))))............ ( -32.80, z-score =  -2.02, R)
>droSec1.super_0 3322039 119 + 21120651
GGAAGAGGUCUGC-GGCUUACAUCCAAAGGUCAAGACUUCAUCCGGUGUGUCAGUUUUAAGCCCCAUUUGCGAAACAAUAAAAAUGUCACACGUGCAUAAGCUGCACGAGAAAUUUUCUC
(((.(((((((..-(((((........))))).))))))).))).(((((.((.(((((.((.......)).......))))).)).)))))(((((.....)))))((((.....)))) ( -35.50, z-score =  -2.80, R)
>consensus
GGAAGAGGUCUGC_GGCUUACAUCCAAAGGUCAAGACUUCAUCCGGUGGGUCAGUUUUAAGCCCCAUUUGCGAAACUAUAAAAAUGACACACGUGCAUAAGCUGCACGAGAAAUUUUCUC
(((.(((((((...(((((........))))).))))))).)))((((((.(........).)))))).......................((((((.....))))))............ (-29.02 = -29.13 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:43 2011