Locus 6954

Sequence ID	dm3.chr3L
Location	11,087,649 – 11,087,752
Length	103
Max. P	0.736948

overview

Window 5

Location	11,087,649 – 11,087,752
Length	103
Sequences	4
Columns	104
Reading direction	forward
Mean pairwise identity	60.87
Shannon entropy	0.64058
G+C content	0.50259
Mean single sequence MFE	-30.98
Consensus MFE	-12.36
Energy contribution	-14.68
Covariance contribution	2.31
Combinations/Pair	1.38
Mean z-score	-1.36
Structure conservation index	0.40
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.54
SVM RNA-class probability	0.736948
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11087649 103 + 24543557
CCUCUGUUGUCCCUUUUCGUGGGCACUCCUAUCCGACAUGCAUUUUGGAUUCUUAAGCAUCUGAUUGGGCUCACCCGGUUUUCGUUUUUGCGGCGGAAUCGGU-
((.....((((((.....).)))))......((((...((((....((((.(....).))))(((((((....)))))))........)))).))))...)).- ( -23.30, z-score =   1.06, R)
>droYak2.chr3L 11118391 103 + 24197627
CCUCGAUCGUACCUUUUCGUGGGCACUCCUGUCCGACUUGUACUUCUGAUGCUUAUGCAUCAGACUGUGCUCGUUCGGAUUUCGUUUUUGGGGCGGAAUCGGU-
((.(((.((.........(((((((....))))).))..((((.((((((((....))))))))..)))).)).)))(((((((((.....))))))))))).- ( -36.60, z-score =  -2.96, R)
>droEre2.scaffold_4784 11096390 103 + 25762168
CCCCGAUUGCCCCUUUUCGCGGGCACUUCUAUCCGACUUGUACUUCUGAUGGUUAAGCAUCAGAUUGUGCUCGCACGGAUUUCGUUUUAGGGGCGGAAUCGGU-
..((((((((((((....((((((((.((.....))........(((((((......)))))))..))))))))(((.....)))...))))))..)))))).- ( -41.00, z-score =  -3.49, R)
>droWil1.scaffold_181017 217219 90 + 939937
------------CCUUGUAUACCCACUGUGGUGGUCCAUAU-CUUCGUAGUGUUGAGGAAGUGAUUUCAUUGGUUUG-CUGACAUCGUUGGAGUCGGUUUGGGA
------------.........((((....(((((..(((.(-(((((......)))))).)))...))))).....(-(((((.((....)))))))).)))). ( -23.00, z-score =  -0.04, R)
>consensus
CCUCGAUUGUCCCUUUUCGUGGGCACUCCUAUCCGACAUGUACUUCGGAUGCUUAAGCAUCAGAUUGUGCUCGCUCGGAUUUCGUUUUUGGGGCGGAAUCGGU_
..................((((((((..................((((((((....))))))))..)))))))).(.(((((((((.....))))))))).).. (-12.36 = -14.68 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:42 2011