Locus 6952

Sequence ID dm3.chr3L
Location 11,048,708 – 11,048,819
Length 111
Max. P 0.706992
window9572

overview

Window 2

Location 11,048,708 – 11,048,819
Length 111
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 81.82
Shannon entropy 0.23164
G+C content 0.46585
Mean single sequence MFE -23.87
Consensus MFE -19.61
Energy contribution -19.50
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.54
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.47
SVM RNA-class probability 0.706992
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11048708 111 + 24543557
UUUGUGUGUUUGGUUUUUUUUUUUAUUGGUUGAAGCCAGCCAGUUAGAAGUCGUUUGGGCCAAGUCAAGAGAUUCCAAAUCCACGAGCAAAGCGGCUAACCAGAAAGUCGC
((((((..(((((..((((((...((((((((....))))))))..((.(((.....)))....))))))))..)))))..))))))....((((((........)))))) ( -32.00, z-score =  -2.32, R)
>droSec1.super_0 3276572 86 + 21120651
-------------------------UUGGUUAAAGCCAGCCAGUUAGAAGUCGUUUGGGCCAAGUCAAGAGAUUCCAAAUCCACGAACAAAGCGGCUAACCAGAAAGUCGC
-------------------------((((((..((((.((..(((....((.(((((((....(((....))))))))))..)).)))...))))))))))))........ ( -18.80, z-score =  -0.99, R)
>droSim1.chr3L 10446542 86 + 22553184
-------------------------UUGGUUGAAGCCAGCCAGUUAGAAGUCGUUUGGGCCAAGUCAAGAGAUUCCAAAUCCACAAGCAAAGCGGCUAACCAGAAAGUCGC
-------------------------(((((((....))))))).........(((((((...((((....))))......)).)))))...((((((........)))))) ( -20.80, z-score =  -1.31, R)
>consensus
_________________________UUGGUUGAAGCCAGCCAGUUAGAAGUCGUUUGGGCCAAGUCAAGAGAUUCCAAAUCCACGAGCAAAGCGGCUAACCAGAAAGUCGC
.........................(((((((....))))))).........(((((((...((((....))))......)).)))))...((((((........)))))) (-19.61 = -19.50 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:40 2011