Locus 6950

Sequence ID dm3.chr3L
Location 11,032,901 – 11,033,042
Length 141
Max. P 0.907321
window9569 window9570

overview

Window 9

Location 11,032,901 – 11,033,010
Length 109
Sequences 8
Columns 110
Reading direction reverse
Mean pairwise identity 73.51
Shannon entropy 0.53407
G+C content 0.50686
Mean single sequence MFE -31.11
Consensus MFE -18.20
Energy contribution -17.83
Covariance contribution -0.37
Combinations/Pair 1.27
Mean z-score -1.36
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.19
SVM RNA-class probability 0.907321
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11032901 109 - 24543557
UCUGGUCGAUGCCACAGCCAUCGGCCACGUUGUCUUUGAAUUCGAUUUCGA-UUGCGUUGCGGCUAUAGAAACUCGAUCGCGAUGUACAAGAACAUCGACAAUGAGUCCU
..((((((((((....).)))))))))(((((((...(...((((((((..-..((......))....)))).))))...)(((((......))))))))))))...... ( -34.90, z-score =  -1.75, R)
>droSim1.chr3L 10430579 109 - 22553184
UCUGGUCGAUGCCACAGCCAUCGGCCACGUUGUCUUUGAAUCCGAUUUCGA-UUGCGUUACGGCUAUAGAAACUCGAUCGCGAUGUACAAGAACAUCGACAACGAGUCCU
..((((((((((....).)))))))))(((((((..............(((-(((.(((.(.......).))).)))))).(((((......))))))))))))...... ( -35.50, z-score =  -2.28, R)
>droSec1.super_0 3260634 109 - 21120651
UCUGGUCGAUGCCACAGCCAUCGGCCACGUUGUCUUUGAAUCCGAUUUCGA-UUGCGUUACGGCUAAAGAAACCCGAUCGCGAUGUACAAGAACAUCGACAACGAGUCCU
..((((((((((....).)))))))))(((((((.(((((......)))))-..(((...(((..........)))..)))(((((......))))))))))))...... ( -35.50, z-score =  -2.49, R)
>droYak2.chr3L 11061155 110 - 24197627
UCUGGUCGAUGCCACAGCCAUCGGCCACGUUGUCUUUGAAUCCGAUUUCCAUUUGCGUUGCGGCCAUAGAAACUCGAUCGCGAUGUACAAGAACAUCGACAACGAGUCCU
..((((((((((....).)))))))))(((((((...(....)((((((....(((((((((..(..........)..)))))))))...))).))))))))))...... ( -34.70, z-score =  -1.94, R)
>droEre2.scaffold_4784 11041748 109 - 25762168
UCUGGUCGAUGCCACAGCCAUCGGCCACGUUGUCUUUGAAUCCGAUUUCGA-UUGCGUUACGGCUACAGAAUCACGAUCGCGAUGUACAAGAACAUCGACAACGAGUCCU
..((((((((((....).)))))))))(((((((.(((((......)))))-..(((...((............))..)))(((((......))))))))))))...... ( -33.70, z-score =  -1.53, R)
>droAna3.scaffold_13337 15946212 102 - 23293914
UCUGGUCGAUGCCAUAGGCAACGGCCACAUUA----AGAGUACUUAUUUGAAUCCGCUUCCGAUCCCGG----UCAUACGCGAUGUACAAGAACAUUGACAAUGAGUCCU
..((((((.((((...)))).)))))).....----..((.(((((((...........(((....)))----......(((((((......)))))).)))))))).)) ( -25.80, z-score =  -1.03, R)
>dp4.chrXR_group6 7323006 83 + 13314419
AUCAGUCGAUGCCUCAGGCAGCGGCAGUGUUGUUAGCAAA------------GUGCACGGCGG---------------CGCGAUGUACAAGAACAUUGACAACGAGUCCU
.((.((((.((((...)))).))))...((((((......------------((((......)---------------)))(((((......)))))))))))))..... ( -24.40, z-score =   0.07, R)
>droPer1.super_47 100919 83 + 592741
AUCAGUCGAUGCCUCAGGCAGCGGCAGUGUUGUUAGCAAA------------GUGCACGGCGG---------------CGCGAUGUACAAGAACAUUGACAACGAGUCCU
.((.((((.((((...)))).))))...((((((......------------((((......)---------------)))(((((......)))))))))))))..... ( -24.40, z-score =   0.07, R)
>consensus
UCUGGUCGAUGCCACAGCCAUCGGCCACGUUGUCUUUGAAUCCGAUUUCGA_UUGCGUUGCGGCUAUAGAAACUCGAUCGCGAUGUACAAGAACAUCGACAACGAGUCCU
..((((((.((.......)).))))))(((((((....................((.......................))(((((......))))))))))))...... (-18.20 = -17.83 +  -0.37)

alignment

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secondary structure

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dotplot

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Window 0

Location 11,032,941 – 11,033,042
Length 101
Sequences 8
Columns 106
Reading direction reverse
Mean pairwise identity 66.50
Shannon entropy 0.64986
G+C content 0.52527
Mean single sequence MFE -33.62
Consensus MFE -10.82
Energy contribution -10.16
Covariance contribution -0.66
Combinations/Pair 1.50
Mean z-score -1.94
Structure conservation index 0.32
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.85
SVM RNA-class probability 0.833888
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 11032941 101 - 24543557
GAUU--CUACGGCCGGGACGAAUCGAUUCAUUCGUCUGGUCGAUGCCACAGCCAUCGGCCACGUU--GUCUUUGAAUUCGAUUUCGA-UUGCGUUGCGGCUAUAGA
...(--(((..((((.((((((((((((((..((.(((((((((((....).))))))))).).)--)....)))).......))))-)).)))).))))..)))) ( -38.71, z-score =  -2.68, R)
>droSim1.chr3L 10430619 101 - 22553184
GAUU--CUACGGCCGGGACGAAUCGAUUCAUUCGUCUGGUCGAUGCCACAGCCAUCGGCCACGUU--GUCUUUGAAUCCGAUUUCGA-UUGCGUUACGGCUAUAGA
...(--(((..((((..(((((((((((((..((.(((((((((((....).))))))))).).)--)....)))))).(....)))-)).)))..))))..)))) ( -38.60, z-score =  -2.93, R)
>droSec1.super_0 3260674 101 - 21120651
GAUU--CUACGGCCGGGACGAAUCGAUUCAUUCGUCUGGUCGAUGCCACAGCCAUCGGCCACGUU--GUCUUUGAAUCCGAUUUCGA-UUGCGUUACGGCUAAAGA
...(--((..(((((..(((((((((((((..((.(((((((((((....).))))))))).).)--)....)))))).(....)))-)).)))..)))))..))) ( -35.70, z-score =  -2.05, R)
>droYak2.chr3L 11061195 102 - 24197627
GAUU--CUACGGCCGGGACGAUUGGAUUCAUUCGUCUGGUCGAUGCCACAGCCAUCGGCCACGUU--GUCUUUGAAUCCGAUUUCCAUUUGCGUUGCGGCCAUAGA
...(--(((.(((((.((((((((((((((..((.(((((((((((....).))))))))).).)--)....)))))))))).........)))).))))).)))) ( -43.10, z-score =  -3.90, R)
>droEre2.scaffold_4784 11041788 101 - 25762168
GAUU--CUACGGCCGGGUCGAAUCGAUUCAUUCGUCUGGUCGAUGCCACAGCCAUCGGCCACGUU--GUCUUUGAAUCCGAUUUCGA-UUGCGUUACGGCUACAGA
...(--((..((((((((((((((((((((..((.(((((((((((....).))))))))).).)--)....))))).))).)))))-))......)))))..))) ( -33.60, z-score =  -1.32, R)
>droAna3.scaffold_13337 15946244 101 - 23293914
GAUCGGUUAGAUUCGACUCGA---GAAUCAUUCCUCUGGUCGAUGCCAUAGGCAACGGCCACAUUAAGAGUACUUAUUUGAAUCCGCUUCCGAUCCCGGUCAUA--
((((((...((((((((((((---(........)))((((((.((((...)))).))))))......)))).......)))))).....)))))).........-- ( -32.21, z-score =  -2.56, R)
>dp4.chrXR_group6 7323038 78 + 13314419
------AUUGAAUCGGAUCGCCCCGA-UCAUUCGAUCAGUCGAUGCCUCAGGCAGCGGCAGUGUU--GUUAGCAAAGUGCACGGCGG-------------------
------............((((..((-((....)))).((((.((((...)))).)))).((((.--...........)))))))).------------------- ( -23.50, z-score =  -0.04, R)
>droPer1.super_47 100951 78 + 592741
------AUUGAAUCGGAUCGCCCCGA-UCAUUCGAUCAGUCGAUGCCUCAGGCAGCGGCAGUGUU--GUUAGCAAAGUGCACGGCGG-------------------
------............((((..((-((....)))).((((.((((...)))).)))).((((.--...........)))))))).------------------- ( -23.50, z-score =  -0.04, R)
>consensus
GAUU__CUACGGCCGGGACGAAUCGAUUCAUUCGUCUGGUCGAUGCCACAGCCAUCGGCCACGUU__GUCUUUGAAUCCGAUUUCGA_UUGCGUUACGGCUAUAGA
..........(((..((((((..........))))))(((((.((.......)).))))).......))).................................... (-10.82 = -10.16 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:38 2011