| Sequence ID | dm3.chr3L |
|---|---|
| Location | 11,032,283 – 11,032,356 |
| Length | 73 |
| Max. P | 0.758557 |
| Location | 11,032,283 – 11,032,356 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.18490 |
| G+C content | 0.39214 |
| Mean single sequence MFE | -7.07 |
| Consensus MFE | -6.19 |
| Energy contribution | -6.23 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 11032283 73 - 24543557 CUCAAUGACUAAUUCCCUUAAUUAUAAACCACCAUUCGCGUCAUUGACCUUUAACCGAUCUAAUGACUUUGAC .((((((((..............................)))))))).......................... ( -7.01, z-score = -1.89, R) >droSim1.chr3L 10430040 73 - 22553184 CUCAAUGACUAAUUCCCUUAAUUAUAAACCACCAUUCGCGUCAUUGACCUUUAACCGAUCUAAUGACUUUGAC .((((((((..............................)))))))).......................... ( -7.01, z-score = -1.89, R) >droSec1.super_0 3260061 73 - 21120651 CUCGAUGACUAAUUCCCUUAAUUACAAACCACCAUUCGCGUCAUUGACCUUUAACCGAUCUAAUGACUUUGAC .((((((((..............................)))))))).......................... ( -6.71, z-score = -1.36, R) >droEre2.scaffold_4784 11041105 73 - 25762168 CUCAAUGAGUAACAACCUUAAUUAUAAACCGCCAUCCGCGUCAUUGACCUUUAACCGAUCUAAUGACUUUGAC .((((.........................((.....))((((((((.(.......).)).)))))).)))). ( -7.20, z-score = -0.90, R) >droAna3.scaffold_13337 15945703 68 - 23293914 CUCAAUGACUAAUCUCCUUAAUUAUACACCCCCGUUCGCGUCAUUGACCUUUAACCG-----AAGACUUUGAC .((((((((..............................)))))))).((((....)-----)))........ ( -7.41, z-score = -1.42, R) >consensus CUCAAUGACUAAUUCCCUUAAUUAUAAACCACCAUUCGCGUCAUUGACCUUUAACCGAUCUAAUGACUUUGAC .((((((((..............................)))))))).......................... ( -6.19 = -6.23 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:36 2011