| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,988,341 – 10,988,434 |
| Length | 93 |
| Max. P | 0.907043 |
| Location | 10,988,341 – 10,988,434 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 71.86 |
| Shannon entropy | 0.49633 |
| G+C content | 0.36910 |
| Mean single sequence MFE | -18.25 |
| Consensus MFE | -10.93 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10988341 93 - 24543557 UGAAAGCA-AGUGAAGCUGAGCACUCUAGAAGGAUUGCCAAGUUUCGUCUCGUACGAGUCCGAAUAUAAAAAAACAUGAAAUGAGAAAAUAAAA---------------- ........-...((((((..(((.(((....))).)))..)))))).((((((.((....))..(((........)))..))))))........---------------- ( -15.90, z-score = -0.85, R) >droSim1.chr3L 10383720 85 - 22553184 -----GCG-AGUGAAGCUGAGCACUCUAGACGGAUUGCCAAGUUUCGUCUCGUACGAGUCCGAAUA---AAAAACAUGAAAUGAGAAAAUAAAA---------------- -----(((-(((((((((..(((.(((....))).)))..))))))).))))).............---.........................---------------- ( -20.30, z-score = -1.86, R) >droSec1.super_0 3211830 90 - 21120651 UGAAAGCG-AGUGAAGCUGAGCACUCUAGACGGAUUGCCAAGUUUCGUCUCGUACGAGUCCGAAUA---AAAAACAUGAAAUGAGAAAAUAAAA---------------- .....(((-(((((((((..(((.(((....))).)))..))))))).))))).............---.........................---------------- ( -20.60, z-score = -1.90, R) >droYak2.chr3L 11014634 106 - 24197627 UGAAAGCG-AGUGAAGCUGAGCACUCUAGACGGAUUGCCAAGUUUCGUCUCGUACGCGAUCGAAUA---AAAAACAUGAAAUGAAAAAAUAUAGUGGAAUAAAAAUAAAA .....(((-(((((((((..(((.(((....))).)))..))))))).))))).(((.........---........................))).............. ( -20.71, z-score = -1.36, R) >droEre2.scaffold_4784 10996362 106 - 25762168 UGAAAGCG-AGUGAAGCUGAGCACUCUAGACGGAUUGCCAAGUUUCGUCUCGUACGAGACCGAGCA---AAAAACAUGAAAUGAAAAAGUUAAAAAAAAUACAAAUAAAA .....((.-...((((((..(((.(((....))).)))..))))))(((((....)))))...)).---......................................... ( -21.50, z-score = -2.01, R) >droWil1.scaffold_180916 85987 74 + 2700594 UGAAACUGUAGUGAAGUUGAACAUUUUAGACAGAUUGCCAACUUUUGUCAACUACAAAAAAAAA-----AAAAACGACC------------------------------- ......(((((((((((.....))))).((((((.........)))))).))))))........-----..........------------------------------- ( -10.50, z-score = -0.89, R) >consensus UGAAAGCG_AGUGAAGCUGAGCACUCUAGACGGAUUGCCAAGUUUCGUCUCGUACGAGACCGAAUA___AAAAACAUGAAAUGAGAAAAUAAAA________________ .....(((.(((((((((..(((.(((....))).)))..))))))).)))))......................................................... (-10.93 = -11.68 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:32 2011