| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,974,526 – 10,974,583 |
| Length | 57 |
| Max. P | 0.646073 |
| Location | 10,974,526 – 10,974,583 |
|---|---|
| Length | 57 |
| Sequences | 7 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 60.00 |
| Shannon entropy | 0.70602 |
| G+C content | 0.64540 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -9.31 |
| Energy contribution | -10.73 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646073 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 10974526 57 + 24543557 ---CCACCCCCGGGGGCAGAAACGGGUUA-ACGUGUCCCCACUU---GCGGGAGCGGAAGGGGG------ ---...(((((((((((....(((.....-.)))))))))..((---((....))))..)))))------ ( -28.20, z-score = -1.47, R) >droWil1.scaffold_180916 70389 70 - 2700594 AAACAUUUCUCAAAUGGUGGAGCAAACUGGAAGUGCCCUUGUCUAGGGGGCGGCGGGGUAGGGGAAGGGG ...(.((((((...((......))..((.(..((.((((.....)))).))..).))...)))))).).. ( -16.80, z-score = 0.71, R) >droAna3.scaffold_13337 15887704 54 + 23293914 ---CUACCGCCGCCCCAUCGGAAGAACCA--ACUGUCCUAGCCG----AGGGGCGGAAGACAG------- ---......(((((((.((((.((.((..--...)).))..)))----)))))))).......------- ( -22.70, z-score = -3.25, R) >droEre2.scaffold_4784 10982443 57 + 25762168 ---CAACCCCUGGGGGCAGAAACGGGUUA-ACGUGUCCCCACUU---UUGGAAUCGGAGAGGGG------ ---...(((((((((((....(((.....-.)))))))))..((---(((....))))))))))------ ( -21.40, z-score = -0.72, R) >droYak2.chr3L 11000138 60 + 24197627 ---CAACCCCUGGGGGCAGAAACGGGUUA-ACGUGUCCCCACUUCGGGGGGGAUCGGAGAGGGG------ ---...(((((((((((....(((.....-.))))))))).((((((......)))))))))))------ ( -27.50, z-score = -1.47, R) >droSec1.super_0 3198107 57 + 21120651 ---CCACCCCUGGGGGCAGAAACGGGUUA-ACGAGUCCCCACUU---GUGGGAGCGGGAAGGGG------ ---...(((((((((((.....((.....-.)).)))))).(((---((....))))).)))))------ ( -22.70, z-score = -0.11, R) >droSim1.chr3L 10370399 57 + 22553184 ---CCACCCCUGGGGGCAGAAACGGGUUA-ACGUGUCCCCACUU---GUGGGAGCGGGAAGGGG------ ---...(((((((((((....(((.....-.))))))))).(((---((....))))).)))))------ ( -24.80, z-score = -0.65, R) >consensus ___CAACCCCUGGGGGCAGAAACGGGUUA_ACGUGUCCCCACUU___GUGGGAGCGGAAAGGGG______ ......(((((((((((....(((.......))))))))).((......))........)))))...... ( -9.31 = -10.73 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:30 2011