Locus 6943

Sequence ID dm3.chr3L
Location 10,967,341 – 10,967,441
Length 100
Max. P 0.512245
window9560

overview

Window 0

Location 10,967,341 – 10,967,441
Length 100
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.83
Shannon entropy 0.15623
G+C content 0.55059
Mean single sequence MFE -39.12
Consensus MFE -29.38
Energy contribution -29.54
Covariance contribution 0.16
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.04
SVM RNA-class probability 0.512245
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 10967341 100 + 24543557
UGCAACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUUGCAAGCCGGCAAGCCGG---------GAAACUGCCAACCUGCAACAGGUAACUUGCAA
(((((.(((.(((((.....)))))((((((...(((((...((....))))))).((((....))))---------))))))))).(((((...)))))...))))). ( -42.30, z-score =  -2.45, R)
>droSim1.chr3L 10362351 100 + 22553184
UGCAACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCCGGCAAACUGG---------GAAACUUGCAACCUGCAACAGGUAACUUGCAA
(((((..((((((((.....))))).(((.((.((((((((..(....)..)....((((....))))---------.....))))))).)).))).)))...))))). ( -37.80, z-score =  -1.79, R)
>droSec1.super_0 3190969 100 + 21120651
UGCAACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCCGGCAAACUGG---------GAAACUGGCAACCUGCAACAGGUAACUUGCAA
(((((.(((((((((.....)))))((((((...((((....((....)).)))).((((....))))---------))))))))).(((((...)))))..)))))). ( -38.60, z-score =  -1.95, R)
>droYak2.chr3L 10992525 109 + 24197627
UGCAACGGCCACAGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAGCUUGCAAGCGAGCAAACUGGCAAAACUGGGAAACUGGCUAACUGCAACAGGUAACUUGCAA
(((((..(((......(((.((....)).))).((((((.(..(...(((((....)))))...)..).....(..(....)..).....)))))).)))...))))). ( -35.60, z-score =  -0.90, R)
>droEre2.scaffold_4784 10975065 100 + 25762168
UGCAACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCUGGCAAACUGG---------GAAACUUGCAACCUGCAGCAGGUAACUUGCAA
(((((..(((((((((.(.((((((((((((.((((....(..(....)..)..)))).).))))))(---------....)))))).).)))))).)))...))))). ( -41.30, z-score =  -2.52, R)
>consensus
UGCAACGGCCGCUGCACGAUGCGGCAGUUUCGAGUUGCAACUGGGAAACUGGCAAGCCGGCAAACUGG_________GAAACUGGCAACCUGCAACAGGUAACUUGCAA
(((((.((((((........)))))((((((...((((....((....)).)))).((((....)))).........))))))....(((((...)))))..)))))). (-29.38 = -29.54 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:29 2011