| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,799,836 – 4,799,928 |
| Length | 92 |
| Max. P | 0.882735 |
| Location | 4,799,836 – 4,799,928 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 57.52 |
| Shannon entropy | 0.85375 |
| G+C content | 0.41451 |
| Mean single sequence MFE | -20.61 |
| Consensus MFE | -5.82 |
| Energy contribution | -6.48 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882735 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 4799836 92 + 23011544 ---CAUCACCACGCAGAAAGUCGCUAUUGCCAGGGUGACUUUCAUCUGGAACGCA-------AAGAGAGAGAAAAGUUGUUAAAACAUGAAACUUGAAUUAU--------- ---..((((((....((((((((((........))))))))))...)))......-------.............(((.....))).)))............--------- ( -17.10, z-score = -0.12, R) >droSim1.chr2L 4669660 91 + 22036055 ---CAUCACCACGCAGAAAGUCGCUAUUGCCAGGGUGACUUUCAUCUGGAAGGCG------AGGAGAGAGAAAAAGUUGGGGAAACAUUAGCC--AAAUUAU--------- ---..((.((.(((.((((((((((........))))))))))..(.....))))------.)).))........((((((....).))))).--.......--------- ( -23.40, z-score = -1.47, R) >droSec1.super_5 2895889 91 + 5866729 ---CAGCACCACGCAGAAAGUCGCUAUUGCCAGGGUGACUUUCAUCUGGAAGGCG------AGGAGAGAGAAAAAGUUGGGAAAACAUUAGAC--AAAUUAU--------- ---.....((.(((.((((((((((........))))))))))..(.....))))------.))...........(((.....))).......--.......--------- ( -19.50, z-score = -0.85, R) >droYak2.chr2L 4809168 97 + 22324452 ---CAUCACCACGCAGAAAGUCGCUAUUGCCAGGGUGACUUUCAUCUGUAAGCAAUACAAAAAACAAAGAAGAGAAGCGGUUAAAUAUGAGCC--AAAAUAU--------- ---.........((.((((((((((........))))))))))...((((.....)))).................))((((.......))))--.......--------- ( -20.30, z-score = -1.94, R) >droEre2.scaffold_4929 4880983 84 + 26641161 ---CAUCACCACGCAGAAAGUCGCUAUUGCCAGGGUGACUUUCAUCUGGAAGCCA------------AAAAGAGAAGAGGUUAA-CAUGAGCC--AAAAUAU--------- ---.........((.((((((((((........)))))))))).((((..((((.------------...........))))..-)).)))).--.......--------- ( -20.10, z-score = -1.66, R) >dp4.chr4_group3 10988648 94 + 11692001 ---CACCACCACGCAGAAAGCCGCUAUCGCCAAAGUGACUUUCAUCUGCAAAAAC------GAAGACAAGAAUGGGUGGAAAAAGCGUGAGUAAAACGUUUGU-------- ---..(((((..((((((((.((((........)))).)))...)))))......------.....((....)))))))...((((((.......))))))..-------- ( -24.10, z-score = -1.63, R) >droPer1.super_8 1720807 94 - 3966273 ---CACCACCACGCAGAAAGCCGCUAUCGCCAAAGUGACUUUCAUCUGCAAAAAC------AAAGACAAGAAUGGGUGGAAAAAGCGUGAGUAAAACGUUUGU-------- ---..(((((..((((((((.((((........)))).)))...)))))......------.....((....)))))))...((((((.......))))))..-------- ( -24.10, z-score = -1.83, R) >droVir3.scaffold_12963 10594630 101 - 20206255 ---AGCCACCAGGCAGAAAGUCGCUAACGCCAAAGUGACUUUCAUCUGCAAAGAA-------AAAAAAGAAGUAGAAGAAGAAAAUAUUAAAUAUAUGUAAGCGGGGAAAU ---.....((..((.((((((((((........)))))))))).(((((......-------.........))))).........................))..)).... ( -22.46, z-score = -3.07, R) >droMoj3.scaffold_6500 1648600 86 + 32352404 ---AGCCACAAGGCAGAAAGUCGCUAACGCCAGAGUGACUUUCAUCUGCAAAGAA--------GAAAAUACCAAAAAAUGUAAGUUAUGAAAAAUGU-------------- ---.(((....))).((((((((((........)))))))))).(((....))).--------..................................-------------- ( -19.20, z-score = -2.88, R) >droGri2.scaffold_15252 12197105 84 + 17193109 ---GGCCACCAGGCAGAAAGUCGCUAUCGCCAAAGUGACUUUCAUCUGCAAG--C------AAAGGCGGAAA-----AGCGAAAACGUGAGUUGAACAUU----------- ---.(((....))).((((((((((........)))))))))).(((((...--.------....)))))..-----......(((....))).......----------- ( -26.90, z-score = -2.50, R) >anoGam1.chr3R 2175801 94 - 53272125 GCAUACGGCGACCAAGGACGCCACCACUAGCAGCAGCAGCUUCAUCUGGGGAUUA------AAAUAAAACAAAAAAAACACGCAAUCUUUACCAAGCAUU----------- ((....((((.(....).)))).((.((((.(((....)))....))))))....------....................)).................----------- ( -17.10, z-score = -1.05, R) >triCas2.ChLG5 18267384 96 - 18847211 ---UGCAGCUGCACAAGCAGCUAAUACUAUUAAAGCUAAUUUCAUCUGAAACAAA---------AAAUAAAAUAUGUAAACAAGAGAUAAAACA-AUAUUUUUUUUCAU-- ---(((((((((....)))))).................((((....))))....---------...........)))...((((((((.....-.)))))))).....-- ( -13.00, z-score = -0.51, R) >consensus ___CACCACCACGCAGAAAGUCGCUAUUGCCAGAGUGACUUUCAUCUGCAAAGAA______AAAAAAAAAAAAAAGUAGAGAAAACAUGAGACA_AAAUUAU_________ ...............(((((.((((........)))).))))).................................................................... ( -5.82 = -6.48 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:28 2011