| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,928,993 – 10,929,096 |
| Length | 103 |
| Max. P | 0.758829 |
| Location | 10,928,993 – 10,929,096 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.16 |
| Shannon entropy | 0.49388 |
| G+C content | 0.41463 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -9.66 |
| Energy contribution | -9.16 |
| Covariance contribution | -0.51 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10928993 103 + 24543557 ACAAUUGAUUUCAAUUUGCAAUCGAA-UUGAAAUGAAAUCAGUGACAAAACAAACG-------CCACUGGUGG-CGACAAC-----UUACACCCGCAUCUCGCAAU--GCGGGAGGGCA ....((.(((((((((((....))))-))))))).))....((...........((-------(((....)))-)).....-----.....(((((((......))--)))))...)). ( -30.90, z-score = -2.91, R) >droSim1.chr3L 10323653 103 + 22553184 ACAAUUGAUUUCAAUUUGCAAUCGAA-UUGAAAUGAAAUCAGUGACAAAACAAACG-------CCACUGGAGG-CGACAAC-----UUACACCCGCAUCUCGCAAU--GGGGGAGGGCA ....((.(((((((((((....))))-))))))).))....((...........((-------((......))-)).....-----.....(((.(((......))--).)))...)). ( -24.90, z-score = -1.30, R) >droSec1.super_0 3153287 103 + 21120651 ACAAUUGAUUUCAAUUUGCAAUCGAA-UUGAAAUGAAAUCAGUGACAAAACAAACG-------CCACUGGAGG-CGACAAC-----UUACACCCGCAUCUCGCAAU--GGGGGCGGGCA ...((((((((((.(((.((((...)-))))))))))))))))...........((-------((......))-)).....-----.....(((((.((((.....--))))))))).. ( -29.00, z-score = -2.40, R) >droYak2.chr3L 10951822 105 + 24197627 ACAAUUGAUUUCAAUUUGCAAUCGAA-UCGAAAUGAAAUCAGUGACAAAACAAACG-------CCAAUGGAAG-CGACAAC-----UUACACCCGCAUCUCGCAAUUCGGGGGAGGGCA ...((((((((((.((((........-.)))).))))))))))............(-------((..((....-))....(-----((...((((.((......)).)))).)))))). ( -23.30, z-score = -0.85, R) >droEre2.scaffold_4784 10935554 103 + 25762168 ACAAUUGAUUUCAAUUUGCAAUCGAA-UUGAAAUGAAAUCAGUGACAAAACAAACG--------CCAAUGGAGGCGACAAC-----UUACACCCGCAUCUCGCAAUGGGGGAGGGCA-- ....((.(((((((((((....))))-))))))).))....((...........((--------((......)))).....-----.....(((.(((......))).)))...)).-- ( -24.90, z-score = -1.32, R) >droAna3.scaffold_13337 15839579 102 + 23293914 ACAAUUGAUUUCAAUUUGCAAUCGAA-UCGAAAUGAAAUCAGUGACAAAACAAACC-------CCGAUGGAGG-CGACAAC-----UUACACCCGCAUCUCGCAUG--GGGGAGGGAC- ...((((((((((.((((........-.)))).))))))))))...........((-------((.(((((((-((.....-----.......)))..))).))).--))))......- ( -27.90, z-score = -2.08, R) >dp4.chrXR_group6 7207714 87 - 13314419 GCAAUUGAUUUCAAUUUGCAAACGAAAUCGAAAUGAAAUCAGUGACAAAACAAACG--------C----------------------UACACCCGCAUCCAUCAGAGGGGGCGGGGG-- (..((((((((((.((((..........)))).))))))))))..)..........--------.----------------------....(((((..((......))..)))))..-- ( -24.90, z-score = -3.00, R) >droPer1.super_4585 304 86 + 4884 GCAAUUGAUUUCAAUUUGCAAACGAAAUCGAAAUGAAAUCAGUGACAAAACAAACG--------C----------------------UACACCCGCAUCCAUCAGAGGGG-CGGGGG-- (..((((((((((.((((..........)))).))))))))))..)..........--------.----------------------....(((((.(((......))))-))))..-- ( -24.10, z-score = -3.00, R) >droWil1.scaffold_181009 802063 115 - 3585778 AUAAUUGAUUUCAAUUUGCAAUCAAAAUCAAAAUGAAAUCAGUGACAAAACAAAAAUCAAAAACCGAUAAAAGGCAACACCAAGUUUUACACCCGCAUAUCAAGCGAGGCGUUUG---- ...((((((((((.((((..........)))).))))))))))...(((((....(((.......)))....(....).....)))))((.(((((.......))).)).))...---- ( -20.70, z-score = -2.41, R) >droVir3.scaffold_13049 15597798 100 + 25233164 GCAAUUGAUUUCAAUUUGCAAUCAAA-UUGAAAUGAAAUCAAUGACAAAACAAAAA--------CGAUAAAAG-CAACAAC-----UUACACCCGCAUAGAUUGCGAGGCGGGAU---- ((..((.(((((((((((....))))-))))))).))(((................--------.)))....)-)......-----.....(((((...(....)...)))))..---- ( -20.83, z-score = -2.73, R) >droMoj3.scaffold_6680 3521566 101 - 24764193 ACAAUUGAUUUCAAUUUGCAAUCAAA-UUGAAAUGAAAUCAAUGACAAAACAAAAA--------CGACAAAGG-CGACAAC-----UUACACCCGCAUAGAAUUCGAGUCGGCUUU--- ....((.(((((((((((....))))-))))))).))...................--------....((((.-((((...-----.....................)))).))))--- ( -16.96, z-score = -1.39, R) >droGri2.scaffold_15110 11557226 100 - 24565398 ACAAUUGAUUUCAAUUUGCAAUCAAA-UUGAAAUGAAAUCAAUGACAAAACAAAAA--------UGAUAAGAG-CGACAAC-----UUACACCCGCAUACAUGUCGAGGCGGCAU---- ....((.(((((((((((....))))-))))))).))...................--------........(-((.....-----.......)))....((((((...))))))---- ( -16.30, z-score = -0.77, R) >consensus ACAAUUGAUUUCAAUUUGCAAUCGAA_UUGAAAUGAAAUCAGUGACAAAACAAACG________CGAUGGAAG_CGACAAC_____UUACACCCGCAUCUCGCAAG_GGGGGGAGGG__ ...((((((((((.((((..........)))).))))))))))............................................................................ ( -9.66 = -9.16 + -0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:23 2011