| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,923,485 – 10,923,539 |
| Length | 54 |
| Max. P | 0.901914 |
| Location | 10,923,485 – 10,923,539 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 90.94 |
| Shannon entropy | 0.17635 |
| G+C content | 0.46562 |
| Mean single sequence MFE | -17.20 |
| Consensus MFE | -14.84 |
| Energy contribution | -14.99 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10923485 54 + 24543557 -----AGUGA-UGUGGCUGAUAGACUUGUUGGCAUUGUUGACAUUUCGUCAGCACUUCGG -----..(((-.(((.(((((.((..(((..((...))..)))..)))))))))).))). ( -17.70, z-score = -2.32, R) >droSim1.chr3L 10318494 54 + 22553184 -----AGUGA-UGUGGCUGAUAGACUUGUUGGCAUUGUUGACAUUUCGUCAGCACGUCGG -----..(((-((((.(((((.((..(((..((...))..)))..)))))))))))))). ( -21.60, z-score = -3.52, R) >droSec1.super_0 3148090 54 + 21120651 -----AGUGA-UGUGGCUGAUAGACUUGUUGGCAUUGUUGACAUUUCGUCAGCACUUCGG -----..(((-.(((.(((((.((..(((..((...))..)))..)))))))))).))). ( -17.70, z-score = -2.32, R) >droYak2.chr3L 10945356 60 + 24197627 AGUGAUGUGGCUGUGGCUGAUAGACUUGUUGGCAUUGUUGACAUUUCGUCAGCACUUCGG ..........(((..((((((.((..(((..((...))..)))..))))))))....))) ( -16.50, z-score = -0.71, R) >droEre2.scaffold_4784 10929870 54 + 25762168 -----AGUGA-UGUGGCUGAUAGACUUGUUGGCAUUGUUGACAUUUCGUCAGCACUUCGG -----..(((-.(((.(((((.((..(((..((...))..)))..)))))))))).))). ( -17.70, z-score = -2.32, R) >droAna3.scaffold_13337 15834107 53 + 23293914 -----AGUGA-UGUGCCUGAUAGACUUGUUGGCAUUGUUGACAUUUCGUCAGCACUUGG- -----.....-.((((.((((.((..(((..((...))..)))..))))))))))....- ( -15.70, z-score = -1.70, R) >dp4.chrXR_group6 7200987 53 - 13314419 -----CGUGA--GUGAAUGAUAGACUUGUUGGCAUCGUUGACAUUUCGUCAGCACUUCUG -----...((--(((..((((.((..(((..((...))..)))..)))))).)))))... ( -13.50, z-score = -0.78, R) >consensus _____AGUGA_UGUGGCUGAUAGACUUGUUGGCAUUGUUGACAUUUCGUCAGCACUUCGG ............(((.(((((.((..(((..((...))..)))..))))))))))..... (-14.84 = -14.99 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:23 2011