| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,908,861 – 10,908,995 |
| Length | 134 |
| Max. P | 0.624513 |
| Location | 10,908,861 – 10,908,995 |
|---|---|
| Length | 134 |
| Sequences | 6 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 87.70 |
| Shannon entropy | 0.22499 |
| G+C content | 0.43204 |
| Mean single sequence MFE | -33.89 |
| Consensus MFE | -28.30 |
| Energy contribution | -28.42 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10908861 134 + 24543557 UAUUUUC-UCGCAGUGUAUGCUUACCGGCAAUCAACACAUACUGAUCAUAUGCAAGUGGUAAGUGGUCAGCACAAUCGGCCAGUGAGGCUGUCUAUUAAUUAAGCGGCCGUAGCAGCCACAAAAAAAAAAAAAAA .......-.....(((..(((((((.(((............((((((((.(((.....))).))))))))........))).))))(((((..((.....))..)))))...)))..)))............... ( -35.55, z-score = -1.78, R) >droAna3.scaffold_13337 15818176 117 + 23293914 UCUUUUU-UCUCAGUGCCUGGACAGCACCAAUCAACACAUACUGAUCAUAUGCAAGUGGUAAGUGGUCAGCACAAUCUGAGACGGAGUCUGUCUAUUAAUUAAGCGACCACAAAAAAA----------------- ..(((((-(.....(((.((((((((.((..(((.......((((((((.(((.....))).)))))))).......)))...)).).)))))))........))).....)))))).----------------- ( -24.84, z-score = -0.24, R) >droEre2.scaffold_4784 10915156 126 + 25762168 UAUUUUCCUCGCAGUGUAUGCUUACGGGCAAUCAACACAUACUGAUCAUAUGCAAGUGGUAAGUGGUCAGCACAAUCGGCCAGUGAGGCUGUCUAUUAAUUAAGCGGCCGUAGCAGCCACAAAAAA--------- .............(((..((((.((((.(............((((((((.(((.....))).))))))))......(((((.....)))))..............).))))))))..)))......--------- ( -36.30, z-score = -1.39, R) >droYak2.chr3L 10929299 125 + 24197627 UAUUUUC-UCGCAGUGUAUGCUUACCGGCAAUCAACACAUACUGAUCAUAUGCAAGUGGUAAGUGGUCAGCACAAUCGGCCAGUGAGGCUGUCUAUUAAUUAAGCGGCCAUAGCAGCCACAAAAAA--------- .......-.....(((..(((((((.(((............((((((((.(((.....))).))))))))........))).))))(((((..((.....))..)))))...)))..)))......--------- ( -35.55, z-score = -1.67, R) >droSec1.super_0 3132350 127 + 21120651 UAUUUUC-UCGCAGUGUAUGCUUACCGGCAAUCAACACAUACUGAUCAUAUGCAAGUGGUAAGUGGUCAGCACAAUCGGCCAGUGAGGCUGUCUAUUAAUUAAGCGGCCGUAGCAGCCACAAAAAAAA------- .......-.....(((..(((((((.(((............((((((((.(((.....))).))))))))........))).))))(((((..((.....))..)))))...)))..)))........------- ( -35.55, z-score = -1.50, R) >droSim1.chr3L 10303772 130 + 22553184 UAUUUUC-UCGCAGUGUAUGCUUACCGGCAAUCAACACAUACUGAUCAUAUGCAAGUGGUAAGUGGUCAGCACAAUCGGCCAGUGAGGCUGUCUAUUAAUUAAGCGGCCGUAGCAGCCACAAAAAAAAAAA---- .......-.....(((..(((((((.(((............((((((((.(((.....))).))))))))........))).))))(((((..((.....))..)))))...)))..)))...........---- ( -35.55, z-score = -1.64, R) >consensus UAUUUUC_UCGCAGUGUAUGCUUACCGGCAAUCAACACAUACUGAUCAUAUGCAAGUGGUAAGUGGUCAGCACAAUCGGCCAGUGAGGCUGUCUAUUAAUUAAGCGGCCGUAGCAGCCACAAAAAA_________ ........((((.((((.(((......)))....))))...((((((((.(((.....))).))))))))............))))(((((..((.....))..))))).......................... (-28.30 = -28.42 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:22 2011