| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,897,311 – 10,897,424 |
| Length | 113 |
| Max. P | 0.706464 |
| Location | 10,897,311 – 10,897,424 |
|---|---|
| Length | 113 |
| Sequences | 7 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 75.62 |
| Shannon entropy | 0.44670 |
| G+C content | 0.55789 |
| Mean single sequence MFE | -44.71 |
| Consensus MFE | -22.03 |
| Energy contribution | -22.16 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.706464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10897311 113 + 24543557 GAUCAUUGAAA-CAGGCUCAAAUCGGUACGGUUUGGUCGGGAU-CGCUGAUG----GGCUGAAG--GUGGCUAUAAGUCGAUGCGUUGACUUUGCUGCCUGGCAGUCAGUGCAUCCAUCAU ......(((..-..(((.(((((((...)))))))))).((((-(((((((.----.(((..((--(..((...(((((((....))))))).))..)))))).))))))).)))).))). ( -45.70, z-score = -3.39, R) >droSim1.chr3L 10291683 113 + 22553184 GAUCACUGAAA-CAGGCUCAAAUCGGUACGGUUUGGCCGGGAU-CGCUGAUG----GGCACAAG--GUGGCUAUAAGUCGAUGCGGGGACUUUGCUGCCUGGCAGUCAGUGCAUCCAUCAU ......(((..-..(((.(((((((...)))))))))).((((-(((((((.----.((...((--(..((...(((((........))))).))..))).)).))))))).)))).))). ( -47.10, z-score = -3.21, R) >droSec1.super_0 3120783 113 + 21120651 GAUCACUGAAA-CAGGCUCAAAUCGGUACGGUUUGGCCGCGAU-CGCUGAUG----GGCAGAAG--GUGGCUAUAAGUCGAUGCGGGGACUUUGCUGCAUGGCAGUCAGUGCAUCCAUCAU ......(((..-..(((.(((((((...))))))))))(.(((-(((((((.----(.((....--(..((...(((((........))))).))..).)).).))))))).)))).))). ( -38.50, z-score = -0.81, R) >droYak2.chr3L 10916342 113 + 24197627 GAUCACUGAAA-CAGGCUCAAAUCGGUACGGUUUGGCUUGGCU-CGCCGAUG----GGCUGAAG--GUGGCUAUAAGUCGUUGCGGGGACUUGGCUGCCUGGCAGUCAGUGCAUCCAUCAU (((((((((..-(((((.(((((((...))))))))))))(((-.(((....----)))...((--(..((((..((((........))))))))..))))))..)))))).)))...... ( -45.00, z-score = -2.11, R) >droEre2.scaffold_4784 10899723 117 + 25762168 GAUCACUGAAA-CAGGCUCAGGUCGGUACGGUUUGGCUGGGAU-CUGUGGUGAUCGGGCUGAAG--GUGGCUAUAAGUCGAGGCGGGGACUUUGCUGCCUGGCAGUCAGUGCAUCCAUCAU (((((((...(-(((((((((.((((......))))))))).)-))))))))))).(((((.((--(..((...(((((........))))).))..)))..))))).............. ( -45.50, z-score = -1.69, R) >dp4.chrXR_group6 7170622 121 - 13314419 GAUCACUGAAAACGGGCUCUGGCCAUGGCUCUCCGCUCUGGGCACUCUGAUGUCUGCUCUUGGCCUGUGGCUACGGGGCCCAGCAGAUACUCGGCAGCGCUGCAGUCAGUGAAUCCAUCAU ..(((((((....(((((((((((((((......(((..(((((..(....)..)))))..))))))))))..)))))))).((((...((....))..))))..)))))))......... ( -47.90, z-score = -1.13, R) >droPer1.super_260 11301 121 - 49539 GAUCACUGAAAACGGGCUCUGGCCAUGGCUCUCCGCUCUGGGCACUCUGAUGUCUCCUCUUGGCCUGUGGCUACGGGGCCCAGCAGAUACUCGGCAGCGUUGCAGUCAGUGAAUCCAUCAU ..(((((((.((((((((((((((((((((.........(((((......)))))......)))).)))))..)))))))).((.(.....).))...)))....)))))))......... ( -43.26, z-score = -0.28, R) >consensus GAUCACUGAAA_CAGGCUCAAAUCGGUACGGUUUGGCCGGGAU_CGCUGAUG____GGCUGAAG__GUGGCUAUAAGUCGAUGCGGGGACUUUGCUGCCUGGCAGUCAGUGCAUCCAUCAU (((((((((.....(((.((((((.....)))))))))............................(((((...(((((........))))).))))).......)))))).)))...... (-22.03 = -22.16 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:18 2011