| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,881,177 – 10,881,272 |
| Length | 95 |
| Max. P | 0.610327 |
| Location | 10,881,177 – 10,881,272 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 59.59 |
| Shannon entropy | 0.75305 |
| G+C content | 0.32351 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -6.99 |
| Energy contribution | -6.16 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.69 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10881177 95 - 24543557 -----CGAGAUAUGAUUAUGAUUAUUAAUUUAAUGCCACUUAUUAAUGCCGUGU-UAUGAGCAGGCUGCCUUUAAAAGUGUGGCUAUAAAGUGAUUAGAUC------ -----...(((.(((((((.((((......))))(((((...((((.(((.(((-.....)))))).....))))....)))))......))))))).)))------ ( -18.50, z-score = -0.69, R) >droAna3.scaffold_13337 15791523 95 - 23293914 -----UGAACUAUGAUUAUGGUUAUUGAUUUAAUGCUGCUAAUUAAUUCCAUUU-UAUUGGAAGGCUACCUUAAAAAGUGCGGCUUAGGAGUGAUUGGACU------ -----..((((((....)))))).....(((((((((.(((.....(((((...-...)))))(((..(((.....)).)..)))))).))).))))))..------ ( -18.00, z-score = -0.56, R) >droEre2.scaffold_4784 10883844 95 - 25762168 -----CGAGAUACGAUUAUGAUUAUUAAUUUAAUGCCCCUUAACUAUGUCGUUU-UAUUAGGAGGCUGCCUUUUGAAGUGUGGCUUAAAAGUGAUGGGAUC------ -----...(((.(.(((((..(((..........((((((.(((......))).-....))).))).(((...........))).)))..))))).).)))------ ( -15.80, z-score = 0.62, R) >droYak2.chr3L 10899844 94 - 24197627 -------AUAUACGAUUAUGAUUAUUAAUUUAAUGCCACUUAAUAAUGUCGUUUAUUAGAGGAGGCUGCCUUUUAAAGUGUGGCUUAAAAGUGAUUGGAAA------ -------.....(((((((.((((......))))((((((((((((......)))))))((((((...)))))).....)))))......)))))))....------ ( -18.50, z-score = -1.14, R) >droSec1.super_0 3100683 76 - 21120651 -----CGAGAUACGAUUAUGAUUAUUAAUUUAAUGCCACUUAUUAA--------------------GGUCUCUUAAAGUGUGGCUAUAAGGUGAUUGGAUC------ -----...(((.(((((((.((((......))))(((((...((((--------------------(....)))))...)))))......))))))).)))------ ( -16.70, z-score = -1.84, R) >droSim1.chr3L 10274616 76 - 22553184 -----CGAGAUACGAUUAUGAUUAUUAAUUUAAUGCCACUUAUUAA--------------------UGCCUUUUAAAGUGUGGCUAUAAGGUGAUUGGCUC------ -----.(((...(((((((.((((......))))(((((...((((--------------------......))))...)))))......))))))).)))------ ( -16.40, z-score = -1.89, R) >triCas2.ChLG3 21120185 105 - 32080666 UUGAGCAAUCUAUAAAAGCUGAUAUCAAAAUUUUAUUAUCUAAGUA--CUAUUAAGGAAAACCAUGUAUUAAUUAGCGAAAAAGGGUAAAGUGAAAACAGCGUAAUA ....((.((((......((((((.....(((..((((.....))))--..)))..((....))........))))))......))))...((....)).))...... ( -11.80, z-score = 0.66, R) >consensus _____CGAGAUACGAUUAUGAUUAUUAAUUUAAUGCCACUUAUUAAU_CCGUUU_UAU_AG_AGGCUGCCUUUUAAAGUGUGGCUAUAAAGUGAUUGGAUC______ ............(((((((.((((......))))(((((........................................)))))......))))))).......... ( -6.99 = -6.16 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:15 2011