| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,879,224 – 10,879,280 |
| Length | 56 |
| Max. P | 0.877942 |
| Location | 10,879,224 – 10,879,280 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 67.32 |
| Shannon entropy | 0.61855 |
| G+C content | 0.45200 |
| Mean single sequence MFE | -12.87 |
| Consensus MFE | -6.55 |
| Energy contribution | -7.08 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10879224 56 + 24543557 -UUCCGGAA-AAGCGCCCUCUGGCGCUACUUAGCAAGACUAUA-GAUUACCGCUAAAAG -...(((..-.((((((....)))))).(((((.....))).)-)....)))....... ( -13.40, z-score = -1.20, R) >droMoj3.scaffold_6680 10908988 55 + 24764193 GGUUAACAAUAAA--CUUUUGGGCAAUUUUUGGUACGCUU--CAACUUCUGAUUUAAAU .............--..((((((((....((((......)--)))....)).)))))). ( -1.40, z-score = 1.78, R) >droSim1.chr3L 10272918 57 + 22553184 -UUCGCGAA-GAGCGCCCUCUGGCGCUACUUAGCAAGACUAUCUGAUUACCGCUAAAAU -...((.((-(((((((....)))))).))).))......................... ( -15.70, z-score = -1.79, R) >droSec1.super_0 3098948 57 + 21120651 -UUCGCGAA-GAGCGCCCUCUGGCGCUACUUAGCAAGACUAUCUGAUUACCGCUAAAAU -...((.((-(((((((....)))))).))).))......................... ( -15.70, z-score = -1.79, R) >droYak2.chr3L 10898002 56 + 24197627 -UUCAGAGA-GAGCGCCCUCUGGCACUUUUUAUUGAGACUAAC-GUUGGGCGCUGAAAU -........-.(((((((..((..(.((((....)))).)..)-)..)))))))..... ( -15.60, z-score = -1.26, R) >droEre2.scaffold_4784 10881989 57 + 25762168 -UUCAGAAAAGAGCGCCCUCUGGCGCUAUUUAUUGAGACUACC-GUUUACCGCUGAAAU -(((((.....((((((....))))))........((((....-))))....))))).. ( -15.40, z-score = -2.64, R) >consensus _UUCAGGAA_GAGCGCCCUCUGGCGCUACUUAGCAAGACUAUC_GAUUACCGCUAAAAU ...........((((((....))))))................................ ( -6.55 = -7.08 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:14 2011