| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,879,103 – 10,879,177 |
| Length | 74 |
| Max. P | 0.842290 |
| Location | 10,879,103 – 10,879,177 |
|---|---|
| Length | 74 |
| Sequences | 8 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 67.46 |
| Shannon entropy | 0.64500 |
| G+C content | 0.36459 |
| Mean single sequence MFE | -15.23 |
| Consensus MFE | -7.06 |
| Energy contribution | -6.51 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10879103 74 + 24543557 AAUUUGGUCAAAAUAAAAUUAAAUGAUAAAAUUCGCCUCGUUUUGAGCUAGGCGAGUGCGAGCGAGAUGGACAC ......(((........(((....)))....((((((((((((......))))))).))))).......))).. ( -15.70, z-score = -0.94, R) >droEre2.scaffold_4784 10881868 74 + 25762168 AACUUGGUCAAAAUAAAAUUAAAUGAUAAAAUUCGCCUCGUUUCGAGCGGGGCGAGUGCGAGUGAGAUGAGAAC .(((((((((.............))))...(((((((((((.....))))))))))).)))))........... ( -21.92, z-score = -3.07, R) >droYak2.chr3L 10897879 74 + 24197627 AAUUUGGUCAAAAUAAAAUUAAAAGAUAAAAUUCGCCUCGUUUCGAGUUGGGCGAGUGCGAGUGAGAUGGCAAA ......((((.......(((....)))...(((((((((((((......))))))).))))))....))))... ( -16.80, z-score = -1.40, R) >droSec1.super_0 3098827 74 + 21120651 AAUUUGGUCAAAAUAAAAUUAAAUGAUAAAAUUCGUCUCGUUUCGAGCUAGGCGAGUGCGAGCGAGAUGGAUAC .(((((((.........)))))))......((((((((((((.((.(((.....))).)))))))))))))).. ( -19.20, z-score = -2.27, R) >droSim1.chr3L 10272797 74 + 22553184 AAUUUGGUCAAAAUAAAAUUAAAUGAUAAAAUUCGCCUCGUUUCGAGCUAGGCGAGUGCGAGCGAGAUGGAUAC ..((((.((........(((....)))...((((((((.((.....)).))))))))..)).))))........ ( -15.00, z-score = -0.50, R) >droVir3.scaffold_13049 15363537 69 - 25233164 -ACUUUGCUUUAAUUUAUAAAUGU--AAUAAUUUGACGCAUUCGCG-UUCGUCGAGUA-AAAAGAGAUGGCAAC -...((((................--........(((((....)))-))((((.....-......)))))))). ( -10.40, z-score = 0.29, R) >droMoj3.scaffold_6680 10908865 73 + 24764193 AAUUUUAUUUGAACUUAUAAAUUUCUAAAAAAUGUACGCAUUUACGCUUCGACGAGCA-GAAAGGGAUAGCAAC ..............((((...(((((...(((((....)))))..((((....)))))-))))...)))).... ( -9.50, z-score = -0.34, R) >droGri2.scaffold_15110 4124588 68 - 24565398 -ACUAGGUUUUAAUUUAAAAAUUU---ACAAUUUGACGCAUUCGCG-UUAGUCGUGUA-GAAAGAGAUAGCUAA -....((((...((((.....(((---(((..(((((((....)))-))))...))))-))...)))))))).. ( -13.30, z-score = -1.27, R) >consensus AAUUUGGUCAAAAUAAAAUUAAAUGAUAAAAUUCGCCUCGUUUCGAGCUAGGCGAGUGCGAGAGAGAUGGCAAC ..............................((((((((.(.......).))))))))................. ( -7.06 = -6.51 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:13 2011