Locus 693

Sequence ID dm3.chr2L
Location 4,797,909 – 4,798,008
Length 99
Max. P 0.935205
window918 window919

overview

Window 8

Location 4,797,909 – 4,798,006
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 71.64
Shannon entropy 0.49990
G+C content 0.51371
Mean single sequence MFE -27.88
Consensus MFE -15.62
Energy contribution -15.50
Covariance contribution -0.12
Combinations/Pair 1.33
Mean z-score -1.28
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.55
SVM RNA-class probability 0.738564
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 4797909 97 - 23011544
UGGUAUAUAUAGUAUCUCUUGAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUGUGAGAUAUUGCACUGGGCCUCCGA
.(((.....(((((((((..((...((((.((.....))..))))..))((((((((......))))))))...)))))))))......)))..... ( -29.10, z-score =  -0.49, R)
>droAna3.scaffold_12916 9366018 75 - 16180835
-------------------UGGCAUUUG---CCUUUUGUUUUUGUUUUUGCCCCCCAAUGAUGGGGCAGGCUCCAAGACAUUGCACUGCCACUGGGA
-------------------(((((..((---(....((((((.(..((((((((........))))))))..).))))))..))).)))))...... ( -26.60, z-score =  -1.32, R)
>droEre2.scaffold_4929 4879100 88 - 26641161
-------UAUA-CAUCUCUUUAUUUUCGGCGCUACU-GCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUCCGAGACAUUGCACUGCGCCUCCGA
-------....-...............(((((...(-((((((((....((((((((......)))))))).))))))....)))..)))))..... ( -32.20, z-score =  -3.35, R)
>droYak2.chr2L 4807289 91 - 22324452
-----CUUGUA-CAUCUCUUUAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUCCGAGACAUUGCACUGAGCCCCCAA
-----......-...............((.(((....((((((((....((((((((......)))))))).))))))....))....))))).... ( -25.90, z-score =  -0.98, R)
>droSec1.super_5 2893991 89 - 5866729
UGGU--AUAUAGUAUCUCUCGAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUGCGAGACAUUGCACUCCGA------
.((.--...((((.((((((((.....((((.....)))).))))....((((((((......))))))))...)))).))))....))..------ ( -25.60, z-score =  -0.24, R)
>consensus
_______UAUA_CAUCUCUUGAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUCCGAGACAUUGCACUGCGCCUCCGA
.....................................((.....(((((((((((((......))))))))...)))))...))............. (-15.62 = -15.50 +  -0.12)

alignment

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secondary structure

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dotplot

Postscript

Window 9

Location 4,797,911 – 4,798,008
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 70.97
Shannon entropy 0.51409
G+C content 0.50951
Mean single sequence MFE -27.66
Consensus MFE -15.62
Energy contribution -15.50
Covariance contribution -0.12
Combinations/Pair 1.33
Mean z-score -1.64
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.39
SVM RNA-class probability 0.935205
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 4797911 97 - 23011544
AUUGGUAUAUAUAGUAUCUCUUGAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUGUGAGAUAUUGCACUGGGCCUCC
...(((.....(((((((((..((...((((.((.....))..))))..))((((((((......))))))))...)))))))))......)))... ( -29.10, z-score =  -0.95, R)
>droAna3.scaffold_12916 9366020 75 - 16180835
-------------------GUUGGCAUU---UGCCUUUUGUUUUUGUUUUUGCCCCCCAAUGAUGGGGCAGGCUCCAAGACAUUGCACUGCCACUGG
-------------------..(((((..---(((....((((((.(..((((((((........))))))))..).))))))..))).))))).... ( -26.80, z-score =  -1.96, R)
>droEre2.scaffold_4929 4879102 86 - 26641161
---------UAUA-CAUCUCUUUAUUUUCGGCGCUACU-GCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUCCGAGACAUUGCACUGCGCCUCC
---------....-...............(((((...(-((((((((....((((((((......)))))))).))))))....)))..)))))... ( -32.20, z-score =  -3.83, R)
>droYak2.chr2L 4807291 91 - 22324452
-----AUCUUGUA-CAUCUCUUUAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUCCGAGACAUUGCACUGAGCCCCC
-----........-...............((.(((....((((((((....((((((((......)))))))).))))))....))....))))).. ( -25.90, z-score =  -1.12, R)
>droSec1.super_5 2893993 89 - 5866729
AUUGG--UAUAUAGUAUCUCUCGAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUGCGAGACAUUGCACUCC------
.....--......(((..(((((......((((.....)))).........((((((((......))))))))..)))))...))).....------ ( -24.30, z-score =  -0.35, R)
>consensus
_________UAUA_CAUCUCUUGAUUUUCGGCGCUACUCGCUUUCGGUUUCGUUUGCCCAUGAUGGGGCAGGCUCCGAGACAUUGCACUGCGCCUCC
.......................................((.....(((((((((((((......))))))))...)))))...))........... (-15.62 = -15.50 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:27 2011