| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,875,369 – 10,875,431 |
| Length | 62 |
| Max. P | 0.573662 |
| Location | 10,875,369 – 10,875,431 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 68.27 |
| Shannon entropy | 0.57534 |
| G+C content | 0.43859 |
| Mean single sequence MFE | -12.53 |
| Consensus MFE | -6.58 |
| Energy contribution | -6.06 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10875369 62 - 24543557 ----UUUCCAUAUUUUUAUUCCAUUUUGCCGCUUUUACGAGAAGCAGCGUUGCCGAGAAGCCGGCG--- ----.......................((.(((((.....))))).))...((((......)))).--- ( -14.30, z-score = -1.34, R) >droEre2.scaffold_4784 10878252 54 - 25762168 ----UUUUCAUAUUUUUAUUCCAUUUUGCAGCUUUUACGAGUAGC--------CGAGAGGCCGGCG--- ----.......................((.((((....)))).((--------(....)))..)).--- ( -9.40, z-score = -0.63, R) >droYak2.chr3L 10894300 55 - 24197627 ----UUUCCAUAUUUUUAUUCCAUAUCGCUGCUUUUACGAGAAGCG-------CGAGAAGCCGGCG--- ----......................((((((((((.((.......-------))))))).)))))--- ( -10.30, z-score = -0.17, R) >droSec1.super_0 3095061 62 - 21120651 ----UUUCCAUAUUUUUAUUCCAUUUUGCCGCUUUUACGAGAAGCAGCGAUGCCGAGAAGCCGGCG--- ----.....................((((.(((((.....))))).)))).((((......)))).--- ( -15.60, z-score = -1.92, R) >droSim1.chr3L 10268533 62 - 22553184 ----UUUCCAUAUUUUUAUUCCAUUUUGCCGCUUUUACGAGAAGCAGCGAUGCCGAGAAGCCGGCG--- ----.....................((((.(((((.....))))).)))).((((......)))).--- ( -15.60, z-score = -1.92, R) >droVir3.scaffold_13049 15360668 69 + 25233164 UGCACAUUCAAAUCCAUAUUCCGUAUUCAUAUAUGUAUAGAUGGCGAGUGGAAGGAAAUAUAAAUGGCA .((.((((....(((.(((((..(((..(((....)))..)))..)))))...)))......)))))). ( -10.00, z-score = 0.70, R) >consensus ____UUUCCAUAUUUUUAUUCCAUUUUGCCGCUUUUACGAGAAGCAGCG_UGCCGAGAAGCCGGCG___ ...........................(((((((((.((..............)))))))).))).... ( -6.58 = -6.06 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:12 2011