Locus 6928

Sequence ID dm3.chr3L
Location 10,857,264 – 10,857,315
Length 51
Max. P 0.539360
window9537

overview

Window 7

Location 10,857,264 – 10,857,315
Length 51
Sequences 7
Columns 61
Reading direction forward
Mean pairwise identity 80.54
Shannon entropy 0.36253
G+C content 0.48416
Mean single sequence MFE -13.37
Consensus MFE -8.58
Energy contribution -9.60
Covariance contribution 1.02
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 0.64
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.09
SVM RNA-class probability 0.539360
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 10857264 51 + 24543557
UCCAUUAGCGACCUGAUUAGCGCGUGUGUUACACGAAGCACAGCGCUUUUU----------
...(((((....))))).(((((.((((((......)))))))))))....---------- ( -14.50, z-score =  -1.89, R)
>droSim1.chr3L 10253670 51 + 22553184
UCCAUUAGCGACCUGAUUAGCGCGUGUGUUACACGAAGCACAGCGCUUUUU----------
...(((((....))))).(((((.((((((......)))))))))))....---------- ( -14.50, z-score =  -1.89, R)
>droSec1.super_0 3077368 51 + 21120651
UCCAUUAGCGACCUGAUUAGCGCGUGUGUUACACGAAGCACAGCGCUUUUU----------
...(((((....))))).(((((.((((((......)))))))))))....---------- ( -14.50, z-score =  -1.89, R)
>droYak2.chr3L 10875542 51 + 24197627
UCCAUUAGCGACCUGAUUAGCGCGUGUGUUACACCAAGCACAGCGCUUUUU----------
...(((((....))))).(((((.((((((......)))))))))))....---------- ( -14.50, z-score =  -2.49, R)
>droEre2.scaffold_4784 10860622 50 + 25762168
UCCAUUAGCGACCUGAUUAGCGCGUGUGUUACACGAAGCACAGCGCAUUU-----------
...(((((....)))))..((((.((((((......))))))))))....----------- ( -14.50, z-score =  -2.03, R)
>droAna3.scaffold_13337 15767322 61 + 23293914
UCCAUUAGCGGACUGAUUAGCGCGUGUGUUACAACAACCACAGGCCAUUUGUAUAAUUUUU
(((......))).......(.((.((((..........)))).)))............... (  -8.50, z-score =   0.67, R)
>dp4.chrXR_group6 7118898 54 - 13314419
UCCAUUAGCGUUCUGAUUAGCGCGUGUGUUGUAACAAGGAGGAGACCUCCCCUC-------
.......(((((......))))).(((......))).(((((...)))))....------- ( -12.60, z-score =  -0.70, R)
>consensus
UCCAUUAGCGACCUGAUUAGCGCGUGUGUUACACGAAGCACAGCGCUUUUU__________
...(((((....)))))..((((.((((((......))))))))))............... ( -8.58 =  -9.60 +   1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:11 2011