| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,845,621 – 10,845,704 |
| Length | 83 |
| Max. P | 0.966192 |
| Location | 10,845,621 – 10,845,704 |
|---|---|
| Length | 83 |
| Sequences | 5 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 99.04 |
| Shannon entropy | 0.01740 |
| G+C content | 0.58072 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -31.84 |
| Energy contribution | -32.04 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.966192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10845621 83 + 24543557 CUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGAGAGGAUGAUGAG (((((..(.(...((.((((.(((((((((....)))))((((((......))))))...))))))).).)).).)..))))) ( -33.00, z-score = -2.26, R) >droEre2.scaffold_4784 10848809 83 + 25762168 CUCAUUGUGCGAGCUGCUCGGCGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGAGAGGAUGAUGAG (((((..(.(...(((((((((...(((((....)))))((((((......))))))))))).))...))...).)..))))) ( -34.30, z-score = -2.24, R) >droYak2.chr3L 10863406 83 + 24197627 CUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUCCGAUGGAGAGGAUGAUGAG (((((..(((((.((..(((.(((((((((....))))))))).)))..)).))))..((..(((...)))..)))..))))) ( -35.10, z-score = -2.71, R) >droSec1.super_0 3066003 83 + 21120651 CUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGAGAGGAUGAUGAG (((((..(.(...((.((((.(((((((((....)))))((((((......))))))...))))))).).)).).)..))))) ( -33.00, z-score = -2.26, R) >droSim1.chr3L 10239779 83 + 22553184 CUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGAGAGGAUGAUGAG (((((..(.(...((.((((.(((((((((....)))))((((((......))))))...))))))).).)).).)..))))) ( -33.00, z-score = -2.26, R) >consensus CUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGAGAGGAUGAUGAG (((((..(.(...((.((((.(((((((((....)))))((((((......))))))...))))))).).)).).)..))))) (-31.84 = -32.04 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:10 2011