| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,841,688 – 10,841,788 |
| Length | 100 |
| Max. P | 0.750126 |
| Location | 10,841,688 – 10,841,788 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 79.21 |
| Shannon entropy | 0.40836 |
| G+C content | 0.38387 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.07 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10841688 100 + 24543557 ------GAGCUUCUC-----UUUGGUGAG-UGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGACGG---CAAAGUGAAG ------...((((.(-----((((..(((-(..(((((.........)))))....)))).......((((((((((.(((....-)))...)))))))))).---))))).)))) ( -24.40, z-score = -1.08, R) >droSim1.chr3L 10235917 100 + 22553184 ------GGGCUUCUC-----UUUGGUGAG-UGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGACGG---CAAAGUGAAG ------(.(((.(((-----......)))-.))).)(((((((((.....)))))))))(((((...((((((((((.(((....-)))...)))))))))).---)))))..... ( -25.70, z-score = -1.60, R) >droSec1.super_0 3062180 100 + 21120651 ------GGGCUUCUC-----UUUGGUGAG-UGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGACGG---CAAAGUGAAG ------(.(((.(((-----......)))-.))).)(((((((((.....)))))))))(((((...((((((((((.(((....-)))...)))))))))).---)))))..... ( -25.70, z-score = -1.60, R) >droYak2.chr3L 10859424 101 + 24197627 ------GAGCUUCUCG----UUUGGUGAG-UGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGACGG---CAAAGUGAAG ------(.(((.((((----.....))))-.))).)(((((((((.....)))))))))(((((...((((((((((.(((....-)))...)))))))))).---)))))..... ( -23.20, z-score = -0.65, R) >droEre2.scaffold_4784 10844899 100 + 25762168 ------GGGCAUCUC-----UUUGGUAAG-UGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGACGG---CAAAGUGAAG ------..(((((.(-----((....)))-.)))))(((((((((.....)))))))))(((((...((((((((((.(((....-)))...)))))))))).---)))))..... ( -27.00, z-score = -2.34, R) >droAna3.scaffold_13337 15753545 91 + 23293914 --------------------GCGAGUGAG-UGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGACGC---CAAAGUGAAG --------------------(((......-...)))(((((((((.....)))))))))(((((..(((((((((((.(((....-)))...)))))))))))---)))))..... ( -20.80, z-score = -0.88, R) >droPer1.super_36 31630 115 + 818889 GCACUUUAGCUCUUUGGUGCUCUGGUGCUCUGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGAGGAGGCUAAAGUGAAG .(((((((((.(((....((.(..(....)..).))(((((((((.....)))))))))((((((..((((((((..........-)))))))).))))))))))))))))))... ( -33.30, z-score = -1.57, R) >dp4.chrXR_group6 7101874 115 - 13314419 GCACUUUAGCUCUUUGGUGCUCUGAUGCUCUGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUAAGCAAUUAGAGGAGGCUAAAGUGAAG .(((((((((.(((...(((.(..(((..(((...)))..)))..)...)))..)))((((((....((((((((..........-))))))))....)))))))))))))))... ( -31.80, z-score = -1.16, R) >droWil1.scaffold_180949 275480 99 - 6375548 ------GGGCUUUCG----CUUCAUUGCGGUUUAGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUUUGUUGUUCAAUUAGGCGAG-CUAAA------ ------.(((((..(----(((((..((......))(((((((((.....)))))))))...))))))(((((((((((((.....))..))))))))))))))-))...------ ( -27.90, z-score = -2.40, R) >droVir3.scaffold_13049 15323936 89 - 25233164 -----------------------CACUUUAGGCUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUGUGCAAUUAGGCGC---UAAAGUGAAG -----------------------(((((((((((..(((((((((.....)))))))))......)))(((((((((.(((....-)))...))))))))).)---)))))))... ( -25.20, z-score = -2.23, R) >droMoj3.scaffold_6680 10870664 90 + 24764193 ----------------------CACUUUUGGGCUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUGUGCAAUUAGGCGC---UAAAGUGAAG ----------------------((((((.(((((.....((((......))))..))))).....((((((((((((.(((....-)))...)))))))))))---)))))))... ( -25.20, z-score = -2.26, R) >droGri2.scaffold_15110 4083975 89 - 24565398 -----------------------CACUUUGGGCUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU-GUUGUGCAAUUAGGCGC---UAAAGUGAAG -----------------------(((((((((((.....((((......))))..))))).....((((((((((((.(((....-)))...)))))))))))---)))))))... ( -25.80, z-score = -2.47, R) >consensus ______G_GCUUCUC_____UUUGGUGAG_UGGUGCGGUUUAUUGGUUUGUAAUAAGCUCUUUGAAGUGUUUAAUUGAAGCUUUU_GUUAAGCAAUUAGACGG___CAAAGUGAAG ....................................(((((((((.....)))))))))(((((...((((((((((.(((.....)))...))))))))))....)))))..... (-15.30 = -15.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:10 2011