| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,837,347 – 10,837,442 |
| Length | 95 |
| Max. P | 0.576931 |
| Location | 10,837,347 – 10,837,442 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 56.18 |
| Shannon entropy | 0.67590 |
| G+C content | 0.37888 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -8.11 |
| Energy contribution | -8.67 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10837347 95 - 24543557 ----UGUAAUUAAAUAGUUUGAAUGUUCACUUUGCCCUUUGGUAAUCGAAUUGGGUAAUUACUAAACUCGAA--------------------CUGCUUACCCAGUAAAAUGACCCCCCA ----.(((((((..((((((((.........(((((....)))))))))))))..))))))).........(--------------------(((......)))).............. ( -16.90, z-score = -1.11, R) >droSim1.chr3L 10231533 114 - 22553184 ----UGUAAUUAAAUAGUUUGCAUGUUUACUUCGCCCUGUGGUAAUCGAAUUAGUUAAUUACUAAACUCGAACCCUUUUAUGAAGAUGUUCUCUGCCUAACCAGUAAAGUGACCCCCA- ----(((((.........)))))...((((((..(.....((((...((.(((((.....)))))..))((((.((((...))))..))))..))))......)..))))))......- ( -16.00, z-score = -0.28, R) >droSec1.super_0 3057807 113 - 21120651 ----UGUAAUUAAAUAGUUUGCAUGUUCACUUCGUCCUGUGGUAAUCGAAUUAGUUAAUUACUAAACUCGAACCCUUUUAUGAAGAUGUUCUCUGCCUACCCAGUAAAGUGACCCCA-- ----(((((.........)))))...((((((....(((.((((.((((.(((((.....)))))..))))............(((.....)))...)))))))..)))))).....-- ( -19.30, z-score = -1.29, R) >dp4.chrXR_group6 7098265 86 + 13314419 UAUUUAUCGAUUGUAAGCUUUUGGGUUC-CUUAGAUCGAACAUGGCAGAGCACUCGAAUUUCCAAUUUCGGG------------------CAUUCCUGAAUCACA-------------- ......((((.(((..(((.....((((-........))))..)))...))).)))).........((((((------------------....)))))).....-------------- ( -16.70, z-score = 0.02, R) >consensus ____UGUAAUUAAAUAGUUUGCAUGUUCACUUCGCCCUGUGGUAAUCGAAUUAGUUAAUUACUAAACUCGAA__________________CUCUGCCUAACCAGUAAAGUGACCCCC__ .....((((((((.(((((((.....((((........))))....))))))).))))))))......................................................... ( -8.11 = -8.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:09 2011