| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,835,782 – 10,835,902 |
| Length | 120 |
| Max. P | 0.666553 |
| Location | 10,835,782 – 10,835,902 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 76.95 |
| Shannon entropy | 0.44344 |
| G+C content | 0.44907 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -11.48 |
| Energy contribution | -12.23 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10835782 120 + 24543557 UUCAAGGAUAAGCUCUUUCCCAGCUGCAUUUUC-CUAUGGAUUCAAAUUCCACGAAUCCAUUUCCCAACCCUUUGAUGUCUUUCGAGAUACAAAUACGUACUUUCUACACAUGCACUUGGG ...(((((.....)))))(((((.(((((....-..((((((((.........))))))))..........((((.(((((....)))))))))................))))).))))) ( -24.80, z-score = -2.33, R) >droEre2.scaffold_4784 10839029 120 + 25762168 UUCAAGGAUAAGCUCCUUCCCAGCUGCAUUUUC-CACUCGAUUCGAAUUCCCCGAAUCCAUUUCCCAACCCUUUGAUGCCCUUCGAGAUACAAAUACGUACUUUCUCCACAUGCACUUGGG ...(((((.....)))))(((((.(((((....-.....((((((.......))))))..........................(((((((......)))...))))...))))).))))) ( -24.30, z-score = -2.77, R) >droYak2.chr3L 10853273 121 + 24197627 UUCAAGGAUAAGCUUCUUCCCAGCUGCAUUUUUGCUCUCGAUUCCAAUACCCUGAAUCCAUUUCCCAGCCCUUUGAAGCCCUUCGAGAUACAAAUACGUACUUUCUCCACAUGCACUUGGG .(((((((...(((((......((((((....)))....(((((.........)))))........))).....)))))...))(((((((......)))...))))........))))). ( -22.10, z-score = -1.13, R) >droSec1.super_0 3056220 120 + 21120651 UUCAAGGAUAAGCUCUUUCCCAGCUGCAUUUUC-CUAUGGAUUCAAAUUCCCCGAAUCCAUUUCCCAACCCUUUCAUGCCUUUCGAGAUACAAAUACGUACUUUCUCCGCAUGCACUUGGG ....((((..((((.......))))......))-))((((((((.........))))))))..(((((......(((((.....(((((((......)))...)))).)))))...))))) ( -26.50, z-score = -2.94, R) >droSim1.chr3L 10229959 120 + 22553184 UUCAAGGAUAAGCUCUUUCCCAGCUGCAUUUUC-CUAUGGAUUCGAAUUCCCCGAAUCCAUUUCCCAACCCUUUGAUGCCUUUCGAGAUACAAAUACGUACUUUCUCCGCAUGCACUUGGG ....((((..((((.......))))......))-))(((((((((.......))))))))).......(((..((((((.....(((((((......)))...)))).)))).))...))) ( -27.70, z-score = -2.51, R) >droVir3.scaffold_13049 15318375 112 - 25233164 UUCGGGGCUG---CUUUUCGCAGG-GCAGCCCAAUCAGAAACUCAAAUAGACUUAAGCCAUAUGCGAAUGGUUC---GCCUUCAAUAAUGUCGAUUGAU--UUUGCAUGGAUGCCACCGGU .((((..(((---(.....))))(-(((..(((..(((((..((((...(((....((.....))(((.((...---.)))))......)))..)))))--))))..))).)))).)))). ( -31.40, z-score = -0.35, R) >consensus UUCAAGGAUAAGCUCUUUCCCAGCUGCAUUUUC_CUAUGGAUUCAAAUUCCCCGAAUCCAUUUCCCAACCCUUUGAUGCCUUUCGAGAUACAAAUACGUACUUUCUCCACAUGCACUUGGG ...(((((.....)))))(((((.(((((..........(((((.........)))))..........................(((((((......))).)))).....))))).))))) (-11.48 = -12.23 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:08 2011