| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,812,287 – 10,812,380 |
| Length | 93 |
| Max. P | 0.799022 |
| Location | 10,812,287 – 10,812,380 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 75.37 |
| Shannon entropy | 0.43594 |
| G+C content | 0.47262 |
| Mean single sequence MFE | -17.98 |
| Consensus MFE | -13.48 |
| Energy contribution | -12.96 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10812287 93 - 24543557 GGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUACUUUCCUCUUGCCCGUCGCCAAACCCAAAAACUCAG------ (((((((.(((.((.....))....((((((((....)))))))).......))).)))))))..............................------ ( -21.00, z-score = -2.61, R) >droSim1.chr3L 10206765 93 - 22553184 GGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUGCUUCCUUCUUGCCCGUCGCCAAACCCAAAAACCCAG------ ((((.((((......))))(((((.((((((((....))))))))........)))))))))...............................------ ( -18.00, z-score = -0.76, R) >droSec1.super_0 3032949 93 - 21120651 GGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUGCUUCCUUCUUGCCCGUCUCCAAACCCAAAAACCCAG------ ((((.((((......))))(((((.((((((((....))))))))........)))))))))...............................------ ( -18.00, z-score = -1.30, R) >droYak2.chr3L 10829585 99 - 24197627 GGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCGCAAAGUUGCUUCCUACUUGCUCGUCGCCAAACCCAAAACACAAAAGCCAA ((...((((......))))((....((((((((....))))))))...((((.((........)))))).....)).....))................ ( -19.40, z-score = -0.11, R) >droGri2.scaffold_15110 4051910 71 + 24565398 UAAAAGUUGCUUGCAUGACGCAAUUCAGCAAUUAUCUG--UGCCGUCGUCAAAGUUUCUUUAGCUAAUCUUGG-------------------------- ..((((..((((..((((((((...(((.......)))--)).))))))..))))..))))............-------------------------- ( -13.50, z-score = -0.62, R) >consensus GGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUGCUUCCUUCUUGCCCGUCGCCAAACCCAAAAACCCAG______ ((((.((.(((.((.....))....((((((((....)))))))).......))).))))))..................................... (-13.48 = -12.96 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:04 2011