| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,790,999 – 4,791,092 |
| Length | 93 |
| Max. P | 0.820628 |
| Location | 4,790,999 – 4,791,092 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 80.75 |
| Shannon entropy | 0.38224 |
| G+C content | 0.51397 |
| Mean single sequence MFE | -31.18 |
| Consensus MFE | -18.83 |
| Energy contribution | -18.35 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4790999 93 - 23011544 AACUCUCGCGCUGCCUGGAGGGCGGUUUCACUGCAUAGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGCGCUGUCAACGGGUCGUGAAAA .....(((((..((((((((((((((((((.(((...))))))..))))))).)))(((..((((....))))..)))..))))))))))... ( -32.30, z-score = -2.34, R) >droAna3.scaffold_12943 1990862 89 + 5039921 ----GGCUUUUUGGGAGAAGGGCGGGCGCAGUGCAGUGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGCGCUGUCAACGGGUCGUGAAAA ----.(((((((....))))))).(((.(((((((((.........)))).))))((((..((((....))))..))))..).)))....... ( -24.20, z-score = 0.57, R) >droEre2.scaffold_4929 4872210 93 - 26641161 AACUCUCGCGCUGCCCGGAGGGCGGUUUCACUGCAUAGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGCGCUGUCAACGGGUCGUGAAAA .....(((((..((((((((((((((((((.(((...))))))..))))))).)))(((..((((....))))..)))..))))))))))... ( -34.50, z-score = -2.83, R) >droYak2.chr2L 4800136 93 - 22324452 AACUCUCGCGCUGCCCGGAGGGCGGUGCCACUGCAUCGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGCGCUGUCAACGGGUCGUGAAAA .....(((((..(((((....(((((((....)))))))...............(((((..((((....))))..)))))))))))))))... ( -34.80, z-score = -2.24, R) >droSec1.super_5 2887261 93 - 5866729 AAUUCUCGCGCUGCCCGGAGGGCGGUUUCACUGCAUAGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGCGCUGUCAACGGGUCGUGAAAA .....(((((..((((((((((((((((((.(((...))))))..))))))).)))(((..((((....))))..)))..))))))))))... ( -34.50, z-score = -2.79, R) >droSim1.chr2L 4660425 93 - 22036055 AACUCUCGCGCUGCCCGGAGGGCGGUUUCACUGCAUAGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGCGCUGUCAACGGGUCGUGAAAA .....(((((..((((((((((((((((((.(((...))))))..))))))).)))(((..((((....))))..)))..))))))))))... ( -34.50, z-score = -2.83, R) >droPer1.super_8 1709658 73 + 3966273 --------GGCAGCGCGGGGCGCUG---CGCUGCAUUGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGUGCUGUCAUCGGA--------- --------.(((((((((....)))---))))))...(((........)))(...((((...((((....)))).))))...).--------- ( -27.30, z-score = -1.20, R) >dp4.chr4_group3 662986 73 + 11692001 --------GGCAGCGCGGGGCGCUG---CGCUGCAUUGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGUGCUGUCAUCGGA--------- --------.(((((((((....)))---))))))...(((........)))(...((((...((((....)))).))))...).--------- ( -27.30, z-score = -1.20, R) >consensus AACUCUCGCGCUGCCCGGAGGGCGGUUUCACUGCAUAGCAUGAUAAAUUGCCACUUGACUUUGCAUAUUUGCGCUGUCAACGGGUCGUGAAAA .........(((((((...)))))))....(((....(((........)))....((((..((((....))))..)))).))).......... (-18.83 = -18.35 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:26 2011