| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,779,897 – 10,779,988 |
| Length | 91 |
| Max. P | 0.595107 |
| Location | 10,779,897 – 10,779,988 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.65 |
| Shannon entropy | 0.30796 |
| G+C content | 0.47723 |
| Mean single sequence MFE | -22.11 |
| Consensus MFE | -13.77 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10779897 91 + 24543557 UCCACCCAAGUCGGCACCACUAC--UCAGCUUAACCCAGCUGAACCGAGAUCGGGCCAAGAC--UUUGUCUGUCUGUCAUAUAAUUAUGAUUAUU------ ..((..(((((((((........--((((((......)))))).(((....))))))..)))--.)))..))...((((((....))))))....------ ( -24.10, z-score = -2.82, R) >droEre2.scaffold_4784 10782290 84 + 25762168 UCCACCCAAGUCGGCUCCACU-----CAGCUUAACCCAGCUGAACCGAGAUCGGGCCAAGA------GACUGGCUGUCAUAUAAUUAUGAUUAUU------ ........(((((((((...(-----(((((......)))))).(((....))).....))------).))))))((((((....))))))....------ ( -25.40, z-score = -2.83, R) >droYak2.chr3L 10793352 96 + 24197627 UCCACCCAAGUCGGCUCCACCACACUCAGCUUAACCCAGGUGAACCGAGAUCGGGCCAAGACUG-----CCGCCUGUCAUAUAAUUAUGAUUAUGAUUAUU ........((.((((..((((.................))))..(((....))).........)-----))).))((((((....)))))).......... ( -18.93, z-score = -0.14, R) >droSec1.super_0 2999991 89 + 21120651 UCCACCCAAGACGGCUCCACU-----CAGCUUAACCCAGCUGAACCGAGAUCGG-CCAAGACAGUCUGUCUGUCUGUCAUAUAAUUAUGAUUAUU------ ........(((((((.....(-----(((((......))))))..((....)))-)).((((.....))))))))((((((....))))))....------ ( -24.30, z-score = -3.00, R) >droSim1.chr3L 10173768 80 + 22553184 UCCACCCAAGUCGGCUCCACU-----CA----------GCUGAACCGAGAUCGGGCCAAGACUGUCUGUCUGUCUGUCAUAUAAUUAUGAUUAUU------ ..........((((((.....-----.)----------))))).(((....)))....((((.....))))....((((((....))))))....------ ( -17.80, z-score = -0.51, R) >consensus UCCACCCAAGUCGGCUCCACU_____CAGCUUAACCCAGCUGAACCGAGAUCGGGCCAAGAC_GU_UGUCUGUCUGUCAUAUAAUUAUGAUUAUU______ ............(((...........(((((......)))))..(((....))))))..................((((((....)))))).......... (-13.77 = -14.62 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:17:03 2011