| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,744,427 – 10,744,521 |
| Length | 94 |
| Max. P | 0.984991 |
| Location | 10,744,427 – 10,744,521 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 96.23 |
| Shannon entropy | 0.07650 |
| G+C content | 0.28928 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -19.80 |
| Energy contribution | -19.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.984991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10744427 94 + 24543557 --GUACAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU --............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.24, R) >droSim1.chr3L 10137776 94 + 22553184 --GUACAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU --............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.24, R) >droSec1.super_0 2964656 94 + 21120651 --GUACAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU --............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.24, R) >droYak2.chr3L 10756806 94 + 24197627 --GUACAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU --............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.24, R) >droEre2.scaffold_4784 10747027 94 + 25762168 --GUACAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU --............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.24, R) >droAna3.scaffold_13337 15657435 96 + 23293914 CAGUACAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU ..............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.13, R) >dp4.chrXR_group6 7000052 94 - 13314419 --GUAUAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU --............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.30, R) >droPer1.super_940 5752 94 + 11099 --GUAUAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC-AAGAUGUU --............((((((...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-.)))))). ( -20.70, z-score = -2.30, R) >droMoj3.scaffold_6680 10770254 95 + 24764193 --ACAAAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUCCCAAGUAGCU --.............(((((.(.(((((((..(((((((((((((....)))))))....(((...)))))))))...))))))).)..)))))... ( -20.80, z-score = -3.24, R) >droVir3.scaffold_13049 15217545 94 - 25233164 --ACAAAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUCC-AAGAAGCU --..((((((....))))))...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-........ ( -20.50, z-score = -2.71, R) >droGri2.scaffold_15110 3975884 94 - 24565398 --ACAAAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUCC-AAGAAGCU --..((((((....))))))...(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))...-........ ( -20.50, z-score = -2.71, R) >consensus __GUACAUAUAUUUAUAUUUAGCCAAUUUUCAACGCUUGUUGACAAAACUGUCAACAAAAUGCAAUGCAAAGCGUAAUAAAAUUGUAC_AAGAUGUU .......................(((((((..(((((((((((((....)))))))....(((...)))))))))...)))))))............ (-19.80 = -19.80 + 0.00)
| Location | 10,744,427 – 10,744,521 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 96.23 |
| Shannon entropy | 0.07650 |
| G+C content | 0.28928 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -21.30 |
| Energy contribution | -21.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10744427 94 - 24543557 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUGUAC-- ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).....................-- ( -21.30, z-score = -1.81, R) >droSim1.chr3L 10137776 94 - 22553184 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUGUAC-- ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).....................-- ( -21.30, z-score = -1.81, R) >droSec1.super_0 2964656 94 - 21120651 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUGUAC-- ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).....................-- ( -21.30, z-score = -1.81, R) >droYak2.chr3L 10756806 94 - 24197627 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUGUAC-- ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).....................-- ( -21.30, z-score = -1.81, R) >droEre2.scaffold_4784 10747027 94 - 25762168 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUGUAC-- ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).....................-- ( -21.30, z-score = -1.81, R) >droAna3.scaffold_13337 15657435 96 - 23293914 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUGUACUG ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..)))))))....................... ( -21.30, z-score = -1.73, R) >dp4.chrXR_group6 7000052 94 + 13314419 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUAUAC-- ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).....................-- ( -21.30, z-score = -2.23, R) >droPer1.super_940 5752 94 - 11099 AACAUCUU-GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUAUAC-- ........-...(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).....................-- ( -21.30, z-score = -2.23, R) >droMoj3.scaffold_6680 10770254 95 - 24764193 AGCUACUUGGGACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUUUGU-- ......((((..(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).))))................-- ( -23.10, z-score = -2.24, R) >droVir3.scaffold_13049 15217545 94 + 25233164 AGCUUCUU-GGACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUUUGU-- ......((-((.(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).))))................-- ( -23.50, z-score = -2.30, R) >droGri2.scaffold_15110 3975884 94 + 24565398 AGCUUCUU-GGACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUUUGU-- ......((-((.(((((((...((((..(((...)))..((((((((......))))))))))))..))))))).))))................-- ( -23.50, z-score = -2.30, R) >consensus AACAUCUU_GUACAAUUUUAUUACGCUUUGCAUUGCAUUUUGUUGACAGUUUUGUCAACAAGCGUUGAAAAUUGGCUAAAUAUAAAUAUAUGUAC__ ............(((((((...((((..(((...)))..((((((((......))))))))))))..)))))))....................... (-21.30 = -21.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:16:59 2011